Macrosynteny options - legumeinfo/ZZBrowse GitHub Wiki

Input parameters for the macro-synteny-blocks service.

Macro-synteny options

Matched: Minimum number (or fraction) of matching gene families.

Intermediate: Maximum number (or fraction) of non-matching gene families.

Mask: Maximum number of occurrences for a gene family.

Distance metric: Levenshtein (normalized) or Jaccard. Jaccard distance includes options for n-gram size and (if n > 1) whether to include reversals.

Species 1 Chromosome: For enhanced visibility in the Whole Genome view, optionally display only macrosynteny blocks involving the selected species 1 chromosome.