General ideas - labsquare/cutevariant GitHub Wiki

Query Module

• Transition / Transversion plot
• HPO widget

Variant Module

• 3d protein viewer
• gene view ( from refseq )
• BAM viewer
• Literature associated
• show TAD https://github.com/deeptools/pyGenomeTracks
• HGVS checker
• Plot field value distribution and show where the actual variant is located
• Annotate variant with https://github.com/biothings/myvariant.py

Static Module

• hapmap on private/public variant
• Upset plot for samples intersection
• Filter strategie for de Novo, recessif, dominant, X-linked
• ANPGM scoring tools
• relatedness2 de vcftools / kinship

Settings

• Genom : Download IGV genom / set location
• Variant: Set a list of " open variant with" : exemple : http://{chrom}-{pos}......