Structure - kpmoorse/sim_reg GitHub Wiki

REGUI | Primary user-called function; prompt user input to load files and format them for input to SIM_ICP2

SIM_ICP2 | Core function; preprocess input data, implement similarity-weighted ICP, and provide a GUI for manual error-checking

EXCTRS2 | Segment input image by pixel value and extract the centroid for each value

SAVEDAT | Save selected data from a structure in CSV format

SUBMASK | Extract a masked subset of the input image around the input centroid

ZERN2 | Calculate Zernike moments of the input image

VCORR | Calculate correlation between input vectors, robust to complex inputs

MINFO | Calculate mutual information between input vectors, assuming independence of Re(u) and Im(u) for complex inputs

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MYGINPUT | FileExchange function

CaImAn | Git repository containing CNMF class

NoRMCorre | Git repository containing BIGREAD2 function