OpenCV

apt-get update 
apt-get install build-essential checkinstall cmake git pkg-config yasm libtiff4-dev libjpeg-dev libjasper-dev libavcodec-dev libavformat-dev libswscale-dev libdc1394-22-dev libxine-dev libgstreamer0.10-dev libgstreamer-plugins-base0.10-dev  libv4l-dev python-dev python-numpy libtbb-dev libgtk2.0-dev libfaac-dev libmp3lame-dev libopencore-amrnb-dev libopencore-amrwb-dev libtheora-dev libvorbis-dev libxvidcore-dev x264 v4l-utils libopenexr-dev python-tk  libeigen3-dev libx264-dev
apt-add-repository ppa:mc3man/trusty-media
apt-get update
apt-get install ffmpeg gstreamer0.10-ffmpeg
conda install -c menpo opencv3=3.1.0
pip install opencv-python

ABYSS

apt-get install libcr-dev mpich2 mpich2-doc
apt-get install libopenmpi-dev
apt-get install openmpi-bin

win10 bash error

OMP: Error #100: Fatal system error detected.
OMP: System error #22: Invalid argument
forrtl: error (76): Abort trap signal

#solution
export KMP_AFFINITY=disabled

window10 bash jupyter

cmd
> lxrun /uninstall /full
> lxrun /install 

다되면

sudo bash
add-apt-repository ppa:aseering/wsl
apt-get update
apt-get install libzmq3 libzmq3-dev
export LD_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu
apt-get install python-pip python-dev
pip install --no-use-wheel -v pyzmq
pip install -vU setuptools
pip install jupyter
jupyter notebook --no-browser

mysql

apt-get update
apt-get install mysql-server-5.6
service mysql start
mysql_secure_installation
mysql_install_db
apt-get install libmysqlclient-dev
cpan install DBD::mysql

vnc

https://www.digitalocean.com/community/tutorials/how-to-install-and-configure-vnc-on-ubuntu-14-04

Jbrowser

• apache를 깔고.

apt-get update
sudo apt-get install apache2 apache2-doc apache2-utils

• /var/www/html/ 에 Jbrowser를 받아서 깔고.
• http://141.40.254.xxx:7080/JBrowse-1.11.6/?data=sample_data/json/volvox

7080은 임의로 포워딩해놓은 것 상황에 맞게 바꾸라. 아파치 기본이 80

• 나오면 성공.
• data=이후의 개인적으로 설치한 디렉토리 패스를 입력하면 된다.

ncurse

룻이 없을때, 다운 받고 설치를 하긴하는데 컨피규레이션 할때 shared-library를 꼭 지정해줘야하고 make install DESTDIR=/my/path/ 해줘야하며 export LIBRARY_PATH=/my/path/usr/lib/:$LIBRARY_PATH 해줘야된다. LD_LIBRARY_PATH랑은 다른듯. 시퐁.

$ ./configure --with-shared --with-termlib=tinfo
$ make install 
$ make install DESTDIR=~/ncurse/

GCC

http://stackoverflow.com/questions/9450394/how-to-install-gcc-from-scratch-with-gmp-mpfr-mpc-elf-without-shared-librari

stub error가 나면

./configure .... --disable-multilib

openmpi

wget https://www.open-mpi.org/software/ompi/v1.8/downloads/openmpi-1.8.1.tar.gz
sudo apt-get install libibnetdisc-dev

http://sysads.co.uk/2014/05/install-open-mpi-1-8-ubuntu-14-04-13-10/

centos

$ ../configure --prefix=/mpi/ --disable-dlopen

bioperl

apt-get clean
apt-get update
apt-get upgrade
apt-get install ssh screen
apt-get clean

apt-get update
apt-get install \
 lynx unzip zip ncftp gcc libc6-dev make mysql-server apache2 \
 perl libgd-gd2-perl libcgi-session-perl libclass-base-perl libexpat1-dev
#http://www.bioperl.org/wiki/Installing_BioPerl_on_Ubuntu_Server

$ cpan
> install Bundle::BioPerl

jbrowser 를 깔면 자동으로 깔아짐. 잘되있음

Jupyter

pip install --upgrade ipython
pip install jsonschema

R과 연동을 위해 https://github.com/takluyver/IRkernel

sudo apt-get install libtool autoconf automake uuid-dev build-essential

git clone git://github.com/jedisct1/libsodium.git
cd libsodium
./autogen.sh
./configure && make check
sudo make install
sudo ldconfig
cd ..

git clone git://github.com/zeromq/libzmq.git
cd libzmq
./autogen.sh
./configure && make check
sudo make install
sudo ldconfig
cd ..

git clone git://github.com/zeromq/czmq.git
cd czmq
./autogen.sh
./configure && make check
sudo make install
sudo ldconfig
cd ..

git clone https://github.com/zeromq/cppzmq.git
cd cppzmq
sudo cp zmq.hpp /usr/local/include/ 

anaconda 에서 인스톨 하는 법

https://samrelton.wordpress.com/2015/07/02/rconda/

blast2go

https://www.blast2go.com/local-blast2go-database-installation