record_id |
|
Y |
character |
Unique ID for this Record |
|
eupi |
|
Y |
character |
Encrypted UPI Number |
|
| sequence_name |
sequence_name |
|
character |
|
Where a patient has multiple sequences a numeric suffix will be appended, e.g. .1 and .2 |
shortid |
shortid |
Y |
character |
The middle portion of the 3-part sequence_name |
|
| country |
country |
|
character |
|
|
| adm1 |
adm1 |
|
character |
|
|
| is_pillar_2 |
is_pillar_2 |
|
logical |
|
|
| sample_date |
sample_date |
|
date |
|
yyyymmdd |
| epi_week |
epi_week |
|
integer |
|
|
| lineage |
lineage |
|
character |
|
|
| lineages_version |
lineages_version |
|
character |
|
Column is blank, set to "character" by default. |
lineage_support |
lineage_support |
|
character |
|
Column is blank, set to "character" by default. |
| lineage_conflict |
|
|
|
|
|
| lineage_ambiguity_score |
|
|
|
|
|
| scorpio_call |
|
|
|
|
|
| scorpio_support |
|
|
|
|
|
| scorpio_conflict |
|
|
|
|
|
| t1001i |
t1001i |
|
character |
|
|
| n501y |
n501y |
|
character |
|
|
| del_21765_6 |
del_21765_6 |
|
character |
|
|
| p681h |
p681h |
|
character |
|
|
| e484k |
e484k |
|
character |
|
|
| y453f |
y453f |
|
character |
|
|
| q27stop |
q27stop |
|
character |
|
|
| d614g |
d614g |
|
character |
|
|
| del_1605_3 |
del_1605_3 |
|
character |
|
|
| n439k |
n439k |
|
character |
|
|
| mutations |
|
|
|
|
|
variants |
variants |
|
character |
|
|
| p323l |
p323l |
|
character |
|
|
| a222v |
a222v |
|
character |
|
|