Future work - informatics-isi-edu/pdb-ihm GitHub Wiki

Infrastructure

  • migrate development/production to Rutger infrastructure
  • scrip-table deployments (e.g. recipe) for new infrastructure (e.g. Ubantu instead of fedora)
  • restic backup to RCSB

Integration with wwPDB

  • Automatically push to PDB-DEV archive
  • Automatically push to PDB archive?
  • Content integration of PDB-DEV?

PDB-DEV New features

Adapt to standard/dictionary changes

  • Support model changes due to changes in dictionaries
  • FAIR/FACT/TRUST?

Ingest, data entry, validation

  • Support model revision
  • Support editing of submitted mmCIF files (changes in all pre-processed records)
  • Email notification to submitters
  • Validation (ligand db?)

Display & visualization

  • convert mmCIF file into a different format for display?

Validation and annotation

  • Validation report?
  • Integration with wwPDB validation system?

Export

  • Different exchange format?

Release/Publication

  • DOI?

Analytics and reports

  • Data mining/analytics ?

Deployments

  • Enhance the dependency changes (e.g. automatically generate proper config files)

PDB Enhancement

  • editing/composition tools for generating PDBx/mmCIF