3rd Conda Virtual Environment - igheyas/Bioinformatics GitHub Wiki

Create a dedicated conda env for your genomics tools It’s best to keep each project’s tools in its own env so you don’t clutter your base Python setup:

conda create -n bioinfo \
  -c conda-forge \
  -c bioconda \
  gatk4  \
  samtools  \
  bcftools  \
  bedtools  \
  snpeff

Disk & Environment Size Miniconda base install is very slim (~400 MB).

Each new env (with GATK, samtools, etc.) will add ~1–2 GB, depending on which tools you include.

You can always remove an env when you’re done with it:

conda deactivate
conda remove -n bioinfo --all

activate your conda venv:

cd /mnt/c/Users/IAGhe/OneDrive/Documents/Bioinformatics 
conda activate bioinfo