aarch64 default singlecell notebook b5c18d295b11 - huchlab/sequencing-docker-stacks GitHub Wiki
- Build timestamp: 2025-11-03T04:10:51Z
- Docker image:
quay.io/huchlab/singlecell-notebook:b5c18d295b11 - Docker image size: 9.21GB
- Git commit SHA: b5c18d295b111d36dc7bbfe834842e3cb52e6167
- Git commit message:
Document .devcontainer development environment configuration
Co-authored-by: fbnrst <[email protected]>
Python 3.13.9
conda info:
active environment : None
user config file : /home/jovyan/.condarc
populated config files : /opt/conda/.condarc
/home/jovyan/.condarc
conda version : 25.9.1
conda-build version : not installed
python version : 3.13.9.final.0
solver : libmamba (default)
virtual packages : __archspec=1=neoverse_n2
__conda=25.9.1=0
__glibc=2.39=0
__linux=6.11.0=0
__unix=0=0
base environment : /opt/conda (writable)
conda av data dir : /opt/conda/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/linux-aarch64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/bioconda/linux-aarch64
https://conda.anaconda.org/bioconda/noarch
package cache : /opt/conda/pkgs
/home/jovyan/.conda/pkgs
envs directories : /opt/conda/envs
/home/jovyan/.conda/envs
platform : linux-aarch64
user-agent : conda/25.9.1 requests/2.32.5 CPython/3.13.9 Linux/6.11.0-1018-azure ubuntu/24.04.3 glibc/2.39 solver/libmamba conda-libmamba-solver/25.4.0 libmambapy/2.3.3
UID:GID : 1000:100
netrc file : None
offline mode : False
mamba info:
libmamba version : 2.3.3
mamba version : 2.3.3
curl version : libcurl/8.16.0 OpenSSL/3.5.4 zlib/1.3.1 zstd/1.5.7 libssh2/1.11.1 nghttp2/1.67.0
libarchive version : libarchive 3.8.2 zlib/1.3.1 liblzma/5.8.1 bz2lib/1.0.8 liblz4/1.10.0 libzstd/1.5.7 liblzo2/2.10 openssl/3.5.4 libb2/bundled
envs directories : /opt/conda/envs
package cache : /opt/conda/pkgs
/home/jovyan/.mamba/pkgs
environment : base
env location : /opt/conda
user config files : /home/jovyan/.mambarc
populated config files : /home/jovyan/.condarc
/opt/conda/.condarc
virtual packages : __unix=0=0
__linux=6.11.0=0
__glibc=2.39=0
__archspec=1=aarch64
channels : https://conda.anaconda.org/conda-forge/linux-aarch64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/bioconda/linux-aarch64
https://conda.anaconda.org/bioconda/noarch
base environment : /opt/conda
platform : linux-aarch64
mamba list:
List of packages in environment: "/opt/conda"
Name Version Build Channel
──────────────────────────────────────────────────────────────────────────────────────────────
_openmp_mutex 4.5 5_kmp_llvm conda-forge
_python_abi3_support 1.0 hd8ed1ab_2 conda-forge
_r-mutex 1.0.1 anacondar_1 conda-forge
absl-py 2.3.1 pyhd8ed1ab_0 conda-forge
adjusttext 1.3.0 pyhd8ed1ab_0 conda-forge
aiohappyeyeballs 2.6.1 pyhd8ed1ab_0 conda-forge
aiohttp 3.13.2 py313h4729333_0 conda-forge
aiosignal 1.4.0 pyhd8ed1ab_0 conda-forge
alembic 1.17.1 pyhd8ed1ab_0 conda-forge
altair 5.5.0 pyhd8ed1ab_1 conda-forge
anndata 0.12.0 pyhd8ed1ab_0 conda-forge
anndata2ri 2.0 pyhdfd78af_0 bioconda
annotated-types 0.7.0 pyhd8ed1ab_1 conda-forge
anyio 4.11.0 pyhcf101f3_0 conda-forge
aom 3.9.1 hcccb83c_0 conda-forge
arboreto 0.1.6 pyh3252c3a_0 bioconda
archspec 0.2.5 pyhd8ed1ab_0 conda-forge
argcomplete 3.6.3 pyhd8ed1ab_0 conda-forge
argon2-cffi 25.1.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 25.1.0 py313h6194ac5_1 conda-forge
arpack 3.9.1 nompi_h6fc4d3a_102 conda-forge
array-api-compat 1.12.0 pyhe01879c_0 conda-forge
arrow 1.4.0 pyhcf101f3_0 conda-forge
asttokens 3.0.0 pyhd8ed1ab_1 conda-forge
async-lru 2.0.5 pyh29332c3_0 conda-forge
attr 2.5.1 h4e544f5_1 conda-forge
attrs 25.4.0 pyh71513ae_0 conda-forge
aws-c-auth 0.9.1 h985d26b_4 conda-forge
aws-c-cal 0.9.5 h4401a86_1 conda-forge
aws-c-common 0.12.5 he30d5cf_0 conda-forge
aws-c-compression 0.3.1 hb6bbc7b_7 conda-forge
aws-c-event-stream 0.5.6 hf48a900_4 conda-forge
aws-c-http 0.10.6 h9bacaf6_1 conda-forge
aws-c-io 0.23.2 h30595d2_1 conda-forge
aws-c-mqtt 0.13.3 h2fe61fc_7 conda-forge
aws-c-s3 0.8.6 h4ed1d1c_6 conda-forge
aws-c-sdkutils 0.2.4 hb6bbc7b_2 conda-forge
aws-checksums 0.2.7 hb6bbc7b_3 conda-forge
aws-crt-cpp 0.35.0 h0988778_1 conda-forge
aws-sdk-cpp 1.11.606 h5fce88b_5 conda-forge
azure-core-cpp 1.16.1 h20031ec_0 conda-forge
azure-identity-cpp 1.13.2 h5cd3b3c_1 conda-forge
azure-storage-blobs-cpp 12.15.0 h4b8de25_1 conda-forge
azure-storage-common-cpp 12.11.0 h01c82c4_1 conda-forge
azure-storage-files-datalake-cpp 12.13.0 h48ee4ef_1 conda-forge
babel 2.17.0 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.14.2 pyha770c72_0 conda-forge
binutils_impl_linux-aarch64 2.44 ha36da51_4 conda-forge
bioconductor-annotationdbi 1.68.0 r44hdfd78af_0 bioconda
bioconductor-annotationfilter 1.30.0 r44hdfd78af_0 bioconda
bioconductor-assorthead 1.0.0 r44hdfd78af_0 bioconda
bioconductor-basilisk 1.18.0 r44hdfd78af_0 bioconda
bioconductor-basilisk.utils 1.18.0 r44hdfd78af_0 bioconda
bioconductor-beachmat 2.22.0 r44h12ab77f_1 bioconda
bioconductor-biobase 2.66.0 r44h59b44dc_0 bioconda
bioconductor-biocfilecache 2.14.0 r44hdfd78af_0 bioconda
bioconductor-biocgenerics 0.52.0 r44hdfd78af_3 bioconda
bioconductor-biocio 1.16.0 r44hdfd78af_0 bioconda
bioconductor-biocneighbors 2.0.0 r44h12ab77f_1 bioconda
bioconductor-biocparallel 1.40.0 r44h12ab77f_1 bioconda
bioconductor-biocsingular 1.22.0 r44h12ab77f_1 bioconda
bioconductor-biocviews 1.74.0 r44hdfd78af_0 bioconda
bioconductor-biomart 2.62.0 r44hdfd78af_0 bioconda
bioconductor-biostrings 2.74.0 r44h59b44dc_1 bioconda
bioconductor-biovizbase 1.54.0 r44h59b44dc_1 bioconda
bioconductor-bluster 1.16.0 r44h12ab77f_1 bioconda
bioconductor-bsgenome 1.74.0 r44hdfd78af_0 bioconda
bioconductor-complexheatmap 2.22.0 r44hdfd78af_0 bioconda
bioconductor-data-packages 20250625 hdfd78af_0 bioconda
bioconductor-delayedarray 0.32.0 r44h59b44dc_1 bioconda
bioconductor-deseq2 1.46.0 r44h12ab77f_1 bioconda
bioconductor-dir.expiry 1.14.0 r44hdfd78af_0 bioconda
bioconductor-edger 4.4.0 r44h59b44dc_0 bioconda
bioconductor-ensembldb 2.30.0 r44hdfd78af_0 bioconda
bioconductor-fgsea 1.32.2 r44h12ab77f_0 bioconda
bioconductor-genomeinfodb 1.42.0 r44hdfd78af_2 bioconda
bioconductor-genomeinfodbdata 1.2.13 r44hdfd78af_0 bioconda
bioconductor-genomicalignments 1.42.0 r44h59b44dc_1 bioconda
bioconductor-genomicfeatures 1.58.0 r44hdfd78af_0 bioconda
bioconductor-genomicranges 1.58.0 r44h59b44dc_2 bioconda
bioconductor-graph 1.84.0 r44h59b44dc_1 bioconda
bioconductor-gviz 1.50.0 r44hdfd78af_0 bioconda
bioconductor-hdf5array 1.34.0 r44h8793571_1 bioconda
bioconductor-hsmmsinglecell 1.26.0 r44hdfd78af_0 bioconda
bioconductor-interactionset 1.34.0 r44h12ab77f_0 bioconda
bioconductor-iranges 2.40.0 r44h59b44dc_2 bioconda
bioconductor-keggrest 1.46.0 r44hdfd78af_0 bioconda
bioconductor-limma 3.62.1 r44h8793571_1 bioconda
bioconductor-loomexperiment 1.24.0 r44hdfd78af_0 bioconda
bioconductor-mast 1.32.0 r44hdfd78af_0 bioconda
bioconductor-matrixgenerics 1.18.0 r44hdfd78af_0 bioconda
bioconductor-metapod 1.14.0 r44h12ab77f_1 bioconda
bioconductor-monocle 2.34.0 r44h12ab77f_0 bioconda
bioconductor-nebulosa 1.16.0 r44hdfd78af_0 bioconda
bioconductor-protgenerics 1.38.0 r44hdfd78af_1 bioconda
bioconductor-rbgl 1.82.0 r44h12ab77f_1 bioconda
bioconductor-rhdf5 2.50.0 r44h6e81ef9_1 bioconda
bioconductor-rhdf5filters 1.18.0 r44h6e81ef9_1 bioconda
bioconductor-rhdf5lib 1.28.0 r44h8793571_0 bioconda
bioconductor-rhtslib 3.2.0 r44h8793571_2 bioconda
bioconductor-rsamtools 2.22.0 r44h6e81ef9_1 bioconda
bioconductor-rtracklayer 1.66.0 r44h8793571_1 bioconda
bioconductor-s4arrays 1.6.0 r44h59b44dc_1 bioconda
bioconductor-s4vectors 0.44.0 r44h59b44dc_2 bioconda
bioconductor-scaledmatrix 1.14.0 r44hdfd78af_0 bioconda
bioconductor-scater 1.34.1 r44hdfd78af_0 bioconda
bioconductor-scran 1.34.0 r44h12ab77f_1 bioconda
bioconductor-scuttle 1.16.0 r44h12ab77f_1 bioconda
bioconductor-singlecellexperiment 1.28.0 r44hdfd78af_0 bioconda
bioconductor-sparsearray 1.6.0 r44h59b44dc_1 bioconda
bioconductor-summarizedexperiment 1.36.0 r44hdfd78af_0 bioconda
bioconductor-trackviewer 1.42.0 r44hdfd78af_0 bioconda
bioconductor-txdbmaker 1.2.0 r44hdfd78af_0 bioconda
bioconductor-ucsc.utils 1.2.0 r44hdfd78af_0 bioconda
bioconductor-variantannotation 1.52.0 r44h8793571_1 bioconda
bioconductor-xvector 0.46.0 r44h8793571_2 bioconda
bioconductor-zellkonverter 1.16.0 r44hdfd78af_0 bioconda
bioconductor-zlibbioc 1.52.0 r44h59b44dc_2 bioconda
biopython 1.86 py313h6194ac5_0 conda-forge
blas 2.138 openblas conda-forge
blas-devel 3.9.0 38_h9678261_openblas conda-forge
bleach 6.2.0 pyh29332c3_4 conda-forge
bleach-with-css 6.2.0 h82add2a_4 conda-forge
blinker 1.9.0 pyhff2d567_0 conda-forge
blosc 1.21.6 hb4dfabd_1 conda-forge
bokeh 3.8.0 pyhd8ed1ab_0 conda-forge
boltons 25.0.0 pyhd8ed1ab_0 conda-forge
bottleneck 1.6.0 py313hcc1970c_1 conda-forge
brotli 1.2.0 hec30622_0 conda-forge
brotli-bin 1.2.0 hf3d421d_0 conda-forge
brotli-python 1.2.0 py313h41095e9_0 conda-forge
brunsli 0.1 h099923c_2 conda-forge
bwidget 1.10.1 h8af1aa0_1 conda-forge
bzip2 1.0.8 h4777abc_8 conda-forge
c-ares 1.34.5 h86ecc28_0 conda-forge
c-blosc2 2.22.0 hce0b784_0 conda-forge
ca-certificates 2025.10.5 hbd8a1cb_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cairo 1.18.4 h83712da_0 conda-forge
cellrank 2.0.7 pyhd8ed1ab_0 conda-forge
celltypist 1.7.1 pyhdfd78af_0 bioconda
certifi 2025.10.5 pyhd8ed1ab_0 conda-forge
certipy 0.2.2 pyhd8ed1ab_0 conda-forge
cffi 2.0.0 py313h897158f_1 conda-forge
charls 2.4.2 h2f0025b_0 conda-forge
charset-normalizer 3.4.4 pyhd8ed1ab_0 conda-forge
click 8.3.0 pyh707e725_0 conda-forge
cloudpickle 3.1.1 pyhd8ed1ab_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_1 conda-forge
comm 0.2.3 pyhe01879c_0 conda-forge
conda 25.9.1 py313hd81a959_0 conda-forge
conda-libmamba-solver 25.4.0 pyhd8ed1ab_0 conda-forge
conda-package-handling 2.4.0 pyh7900ff3_2 conda-forge
conda-package-streaming 0.12.0 pyhd8ed1ab_0 conda-forge
contourpy 1.3.3 py313he6111f0_2 conda-forge
cpp-expected 1.3.1 hdc560ac_0 conda-forge
cpython 3.13.9 py313hd8ed1ab_101 conda-forge
crc32c 2.8 py313h62ef0ea_0 conda-forge
cryptography 46.0.3 py313hbc6eba2_0 conda-forge
curl 8.16.0 h7bfdcfb_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_1 conda-forge
cython 3.1.6 py313h4aae401_0 conda-forge
cytoolz 1.1.0 py313he149459_1 conda-forge
dask 2025.10.0 pyhcf101f3_0 conda-forge
dask-core 2025.10.0 pyhcf101f3_0 conda-forge
dav1d 1.2.1 h31becfc_0 conda-forge
dcor 0.6 pyhd8ed1ab_1 conda-forge
debugpy 1.8.17 py313h59403f9_0 conda-forge
decorator 5.2.1 pyhd8ed1ab_0 conda-forge
decoupler-py 2.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
dill 0.4.0 pyhd8ed1ab_0 conda-forge
distributed 2025.10.0 pyhcf101f3_0 conda-forge
distro 1.9.0 pyhd8ed1ab_1 conda-forge
docrep 0.3.2 pyh44b312d_0 conda-forge
donfig 0.8.1.post1 pyhd8ed1ab_1 conda-forge
et_xmlfile 2.0.0 pyhd8ed1ab_1 conda-forge
exceptiongroup 1.3.0 pyhd8ed1ab_0 conda-forge
executing 2.2.1 pyhd8ed1ab_0 conda-forge
fbpca 1.0 pyhd8ed1ab_1 conda-forge
fcsparser 0.2.8 pyhdfd78af_0 bioconda
fftw 3.3.10 mpi_mpich_ha2ec572_10 conda-forge
filelock 3.20.0 pyhd8ed1ab_0 conda-forge
fmt 12.0.0 h416241a_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 h77eed37_3 conda-forge
fontconfig 2.15.0 h8dda3cd_1 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.60.1 py313hd3a54cf_0 conda-forge
formulaic 1.2.1 pyhd8ed1ab_2 conda-forge
formulaic-contrasts 1.0.0 pyhdfd78af_0 bioconda
fqdn 1.5.1 pyhd8ed1ab_1 conda-forge
freetype 2.14.1 h8af1aa0_0 conda-forge
fribidi 1.0.16 he30d5cf_0 conda-forge
frozendict 2.4.6 py313h6194ac5_1 conda-forge
frozenlist 1.7.0 py313hf71145f_0 conda-forge
fsspec 2025.10.0 pyhd8ed1ab_0 conda-forge
future 1.0.0 pyhd8ed1ab_2 conda-forge
gcc_impl_linux-aarch64 15.2.0 h679d96a_7 conda-forge
geosketch 1.3 pyhdfd78af_0 bioconda
gflags 2.2.2 h5ad3122_1005 conda-forge
gfortran_impl_linux-aarch64 15.2.0 hcb832a5_7 conda-forge
giflib 5.2.2 h31becfc_0 conda-forge
gitdb 4.0.12 pyhd8ed1ab_0 conda-forge
gitpython 3.1.45 pyhff2d567_0 conda-forge
glog 0.7.1 h468a4a4_0 conda-forge
glpk 5.0 h66325d0_0 conda-forge
gmp 6.3.0 h0a1ffab_2 conda-forge
gmpy2 2.2.1 py313h4ba42fe_1 conda-forge
graphite2 1.3.14 hfae3067_2 conda-forge
greenlet 3.2.4 py313he352c24_1 conda-forge
grpcio 1.73.1 py313h8a5c2c2_1 conda-forge
gsl 2.7 h294027d_0 conda-forge
gxx_impl_linux-aarch64 15.2.0 h0902481_7 conda-forge
h11 0.16.0 pyhd8ed1ab_0 conda-forge
h2 4.3.0 pyhcf101f3_0 conda-forge
h5py 3.15.1 nompi_py313h624fb37_100 conda-forge
harfbuzz 12.1.0 he4899c9_0 conda-forge
harmonypy 0.0.10 pyhdfd78af_0 bioconda
hdf5 1.14.6 mpi_mpich_h013f604_3 conda-forge
hnswlib 0.8.0 py313h5907498_1 conda-forge
hpack 4.1.0 pyhd8ed1ab_0 conda-forge
httpcore 1.0.9 pyh29332c3_0 conda-forge
httpx 0.28.1 pyhd8ed1ab_0 conda-forge
hyperframe 6.1.0 pyhd8ed1ab_0 conda-forge
hypre 2.32.0 mpi_mpich_h585e9d9_1 conda-forge
icu 75.1 hf9b3779_0 conda-forge
idna 3.11 pyhd8ed1ab_0 conda-forge
igraph 1.0.0 h1827c4d_0 conda-forge
imagecodecs 2025.8.2 py313hb888164_6 conda-forge
imageio 2.37.0 pyhfb79c49_0 conda-forge
importlib-metadata 8.7.0 pyhe01879c_1 conda-forge
interface_meta 1.3.0 pyhd8ed1ab_1 conda-forge
intervaltree 3.1.0 pyhd8ed1ab_1 conda-forge
ipykernel 7.1.0 pyha191276_0 conda-forge
ipympl 0.9.8 pyhcf101f3_0 conda-forge
ipython 9.6.0 pyhfa0c392_0 conda-forge
ipython_genutils 0.2.0 pyhd8ed1ab_2 conda-forge
ipython_pygments_lexers 1.1.1 pyhd8ed1ab_0 conda-forge
ipywidgets 8.1.8 pyhd8ed1ab_0 conda-forge
isoduration 20.11.0 pyhd8ed1ab_1 conda-forge
jax 0.7.2 pyhd8ed1ab_0 conda-forge
jaxlib 0.7.2 cpu_py313h49c3912_0 conda-forge
jaxopt 0.8.4 pyhd8ed1ab_0 conda-forge
jedi 0.19.2 pyhd8ed1ab_1 conda-forge
jinja2 3.1.6 pyhd8ed1ab_0 conda-forge
joblib 1.5.2 pyhd8ed1ab_0 conda-forge
jq 1.8.1 h06eaf92_0 conda-forge
json5 0.12.1 pyhd8ed1ab_0 conda-forge
jsonpatch 1.33 pyhd8ed1ab_1 conda-forge
jsonpointer 3.0.0 py313hd81a959_2 conda-forge
jsonschema 4.25.1 pyhe01879c_0 conda-forge
jsonschema-specifications 2025.9.1 pyhcf101f3_0 conda-forge
jsonschema-with-format-nongpl 4.25.1 he01879c_0 conda-forge
jupyter 1.1.1 pyhd8ed1ab_1 conda-forge
jupyter-lsp 2.3.0 pyhcf101f3_0 conda-forge
jupyter-pluto-proxy 0.1.2 pyhd8ed1ab_0 conda-forge
jupyter-server-mathjax 0.2.6 pyhbbac1ac_2 conda-forge
jupyter-server-proxy 4.4.0 pyhd8ed1ab_1 conda-forge
jupyter_client 8.6.3 pyhd8ed1ab_1 conda-forge
jupyter_console 6.6.3 pyhd8ed1ab_1 conda-forge
jupyter_core 5.9.1 pyhc90fa1f_0 conda-forge
jupyter_events 0.12.0 pyh29332c3_0 conda-forge
jupyter_server 2.17.0 pyhcf101f3_0 conda-forge
jupyter_server_terminals 0.5.3 pyhd8ed1ab_1 conda-forge
jupyterhub-base 5.4.2 pyhc90fa1f_0 conda-forge
jupyterhub-singleuser 5.4.2 h0b4b229_0 conda-forge
jupyterlab 4.4.10 pyhd8ed1ab_0 conda-forge
jupyterlab-git 0.51.2 pyhd8ed1ab_0 conda-forge
jupyterlab_execute_time 3.2.0 pyhd8ed1ab_1 conda-forge
jupyterlab_pygments 0.3.0 pyhd8ed1ab_2 conda-forge
jupyterlab_server 2.28.0 pyhcf101f3_0 conda-forge
jupyterlab_widgets 3.0.16 pyhd8ed1ab_0 conda-forge
jxrlib 1.1 h31becfc_3 conda-forge
kernel-headers_linux-aarch64 5.14.0 h05a177a_2 conda-forge
keyutils 1.6.3 h86ecc28_0 conda-forge
kiwisolver 1.4.9 py313h314c631_1 conda-forge
krb5 1.21.3 h50a48e9_0 conda-forge
lark 1.3.1 pyhd8ed1ab_0 conda-forge
lazy-loader 0.4 pyhd8ed1ab_2 conda-forge
lcms2 2.17 hc88f144_0 conda-forge
ld_impl_linux-aarch64 2.44 hd32f0e1_4 conda-forge
legacy-api-wrap 1.4.1 pyhd8ed1ab_0 conda-forge
legendkit 0.3.4 pyhd8ed1ab_0 conda-forge
leidenalg 0.11.0 py313he352c24_0 conda-forge
lerc 4.0.0 hfdc4d58_1 conda-forge
libabseil 20250512.1 cxx17_h201e9ed_0 conda-forge
libaec 1.1.4 h1e66f74_0 conda-forge
libamd 3.3.3 h913f464_7100102 conda-forge
libarchive 3.8.2 gpl_hd746d8a_100 conda-forge
libarrow 22.0.0 hf4c6730_3_cpu conda-forge
libarrow-acero 22.0.0 hb326ee9_3_cpu conda-forge
libarrow-compute 22.0.0 hec39e8e_3_cpu conda-forge
libarrow-dataset 22.0.0 hb326ee9_3_cpu conda-forge
libarrow-substrait 22.0.0 hf75f729_3_cpu conda-forge
libavif16 1.3.0 hfe54310_2 conda-forge
libblas 3.9.0 38_haddc8a3_openblas conda-forge
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tornado 6.5.2 py313he149459_1 conda-forge
tqdm 4.67.1 pyhd8ed1ab_1 conda-forge
traitlets 5.14.3 pyhd8ed1ab_1 conda-forge
truststore 0.10.3 pyhe01879c_0 conda-forge
typing-extensions 4.15.0 h396c80c_0 conda-forge
typing-inspection 0.4.2 pyhd8ed1ab_0 conda-forge
typing_extensions 4.15.0 pyhcf101f3_0 conda-forge
typing_utils 0.1.0 pyhd8ed1ab_1 conda-forge
tzdata 2025b h78e105d_0 conda-forge
tzlocal 5.3.1 pyh8f84b5b_0 conda-forge
ucx 1.19.0 ha79f86a_5 conda-forge
umap-learn 0.5.9.post2 py313hd81a959_0 conda-forge
unixodbc 2.3.12 h7b6a552_0 conda-forge
uri-template 1.3.0 pyhd8ed1ab_1 conda-forge
urllib3 2.5.0 pyhd8ed1ab_0 conda-forge
uv 0.9.7 h0157bdf_0 conda-forge
wcwidth 0.2.14 pyhd8ed1ab_0 conda-forge
webcolors 25.10.0 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 pyhd8ed1ab_3 conda-forge
websocket-client 1.9.0 pyhd8ed1ab_0 conda-forge
werkzeug 3.1.3 pyhd8ed1ab_1 conda-forge
widgetsnbextension 4.0.15 pyhd8ed1ab_0 conda-forge
wrapt 2.0.0 py313h6194ac5_0 conda-forge
xarray 2025.10.1 pyhd8ed1ab_0 conda-forge
xgboost 3.1.1 cpu_pyhb39878e_0 conda-forge
xlrd 2.0.2 pyhd8ed1ab_0 conda-forge
xmltodict 1.0.2 pyhcf101f3_0 conda-forge
xorg-libice 1.1.2 h86ecc28_0 conda-forge
xorg-libsm 1.2.6 h0808dbd_0 conda-forge
xorg-libx11 1.8.12 hca56bd8_0 conda-forge
xorg-libxau 1.0.12 h86ecc28_0 conda-forge
xorg-libxdmcp 1.1.5 h57736b2_0 conda-forge
xorg-libxext 1.3.6 h57736b2_0 conda-forge
xorg-libxrender 0.9.12 h86ecc28_0 conda-forge
xorg-libxt 1.3.1 h57736b2_0 conda-forge
xyzservices 2025.10.0 pyhd8ed1ab_0 conda-forge
yaml 0.2.5 h80f16a2_3 conda-forge
yaml-cpp 0.8.0 h5ad3122_0 conda-forge
yarl 1.22.0 py313hd3a54cf_0 conda-forge
yq 3.4.3 pyhe01879c_2 conda-forge
zarr 3.1.3 pyhcf101f3_0 conda-forge
zeromq 4.3.5 hefbcea8_9 conda-forge
zfp 1.0.1 h05c1e92_3 conda-forge
zict 3.0.0 pyhd8ed1ab_1 conda-forge
zipp 3.23.0 pyhd8ed1ab_0 conda-forge
zlib 1.3.1 h86ecc28_2 conda-forge
zlib-ng 2.2.5 h92288e7_0 conda-forge
zstandard 0.25.0 py313h62ef0ea_0 conda-forge
zstd 1.5.7 hbcf94c1_2 conda-forge
apt list --installed:
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Listing...
adduser/now 3.137ubuntu1 all [installed,local]
apt/now 2.8.3 arm64 [installed,local]
base-files/now 13ubuntu10.3 arm64 [installed,local]
base-passwd/now 3.6.3build1 arm64 [installed,local]
bash/now 5.2.21-2ubuntu4 arm64 [installed,local]
binutils-aarch64-linux-gnu/now 2.42-4ubuntu2.6 arm64 [installed,local]
binutils-common/now 2.42-4ubuntu2.6 arm64 [installed,local]
binutils/now 2.42-4ubuntu2.6 arm64 [installed,local]
bsdutils/now 1:2.39.3-9ubuntu6.3 arm64 [installed,local]
build-essential/now 12.10ubuntu1 arm64 [installed,local]
bzip2/now 1.0.8-5.1build0.1 arm64 [installed,local]
ca-certificates/now 20240203 all [installed,local]
cm-super-minimal/now 0.3.4-17 all [installed,local]
cm-super/now 0.3.4-17 all [installed,local]
coreutils/now 9.4-3ubuntu6.1 arm64 [installed,local]
cpp-13-aarch64-linux-gnu/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
cpp-13/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
cpp-aarch64-linux-gnu/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
cpp/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
curl/now 8.5.0-2ubuntu10.6 arm64 [installed,local]
dash/now 0.5.12-6ubuntu5 arm64 [installed,local]
debconf/now 1.5.86ubuntu1 all [installed,local]
debianutils/now 5.17build1 arm64 [installed,local]
diffutils/now 1:3.10-1build1 arm64 [installed,local]
dpkg-dev/now 1.22.6ubuntu6.5 all [installed,local]
dpkg/now 1.22.6ubuntu6.5 arm64 [installed,local]
dvipng/now 1.15-1.1 arm64 [installed,local]
e2fsprogs/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
ffmpeg/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
findutils/now 4.9.0-5build1 arm64 [installed,local]
fontconfig-config/now 2.15.0-1.1ubuntu2 arm64 [installed,local]
fontconfig/now 2.15.0-1.1ubuntu2 arm64 [installed,local]
fonts-dejavu-core/now 2.37-8 all [installed,local]
fonts-dejavu-extra/now 2.37-8 all [installed,local]
fonts-dejavu-mono/now 2.37-8 all [installed,local]
fonts-dejavu/now 2.37-8 all [installed,local]
fonts-liberation/now 1:2.1.5-3 all [installed,local]
fonts-lmodern/now 2.005-1 all [installed,local]
fonts-urw-base35/now 20200910-8 all [installed,local]
g++-13-aarch64-linux-gnu/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
g++-13/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
g++-aarch64-linux-gnu/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
g++/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
gcc-13-aarch64-linux-gnu/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
gcc-13-base/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
gcc-13/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
gcc-14-base/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
gcc-aarch64-linux-gnu/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
gcc/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
gfortran-13-aarch64-linux-gnu/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
gfortran-13/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
gfortran-aarch64-linux-gnu/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
gfortran/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
ghostscript/now 10.02.1~dfsg1-0ubuntu7.8 arm64 [installed,local]
git-lfs/now 3.4.1-1ubuntu0.3 arm64 [installed,local]
git-man/now 1:2.43.0-1ubuntu7.3 all [installed,local]
git/now 1:2.43.0-1ubuntu7.3 arm64 [installed,local]
gpgv/now 2.4.4-2ubuntu17.3 arm64 [installed,local]
grep/now 3.11-4build1 arm64 [installed,local]
gzip/now 1.12-1ubuntu3.1 arm64 [installed,local]
hostname/now 3.23+nmu2ubuntu2 arm64 [installed,local]
init-system-helpers/now 1.66ubuntu1 all [installed,local]
less/now 590-2ubuntu2.1 arm64 [installed,local]
libacl1/now 2.3.2-1build1.1 arm64 [installed,local]
libaom3/now 3.8.2-2ubuntu0.1 arm64 [installed,local]
libapache-pom-java/now 29-2 all [installed,local]
libapparmor1/now 4.0.1really4.0.1-0ubuntu0.24.04.4 arm64 [installed,local]
libapt-pkg6.0t64/now 2.8.3 arm64 [installed,local]
libasan8/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libasound2-data/now 1.2.11-1ubuntu0.1 all [installed,local]
libasound2t64/now 1.2.11-1ubuntu0.1 arm64 [installed,local]
libass9/now 1:0.17.1-2build1 arm64 [installed,local]
libassuan0/now 2.5.6-1build1 arm64 [installed,local]
libasyncns0/now 0.8-6build4 arm64 [installed,local]
libatomic1/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libattr1/now 1:2.5.2-1build1.1 arm64 [installed,local]
libaudit-common/now 1:3.1.2-2.1build1.1 all [installed,local]
libaudit1/now 1:3.1.2-2.1build1.1 arm64 [installed,local]
libavahi-client3/now 0.8-13ubuntu6 arm64 [installed,local]
libavahi-common-data/now 0.8-13ubuntu6 arm64 [installed,local]
libavahi-common3/now 0.8-13ubuntu6 arm64 [installed,local]
libavc1394-0/now 0.5.4-5build3 arm64 [installed,local]
libavcodec60/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libavdevice60/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libavfilter9/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libavformat60/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libavutil58/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libbinutils/now 2.42-4ubuntu2.6 arm64 [installed,local]
libblas3/now 3.12.0-3build1.1 arm64 [installed,local]
libblkid1/now 2.39.3-9ubuntu6.3 arm64 [installed,local]
libbluray2/now 1:1.3.4-1build1 arm64 [installed,local]
libbrotli1/now 1.1.0-2build2 arm64 [installed,local]
libbs2b0/now 3.1.0+dfsg-7build1 arm64 [installed,local]
libbsd0/now 0.12.1-1build1.1 arm64 [installed,local]
libbz2-1.0/now 1.0.8-5.1build0.1 arm64 [installed,local]
libc-bin/now 2.39-0ubuntu8.6 arm64 [installed,local]
libc-dev-bin/now 2.39-0ubuntu8.6 arm64 [installed,local]
libc6-dev/now 2.39-0ubuntu8.6 arm64 [installed,local]
libc6/now 2.39-0ubuntu8.6 arm64 [installed,local]
libcaca0/now 0.99.beta20-4build2 arm64 [installed,local]
libcairo-gobject2/now 1.18.0-3build1 arm64 [installed,local]
libcairo2/now 1.18.0-3build1 arm64 [installed,local]
libcap-ng0/now 0.8.4-2build2 arm64 [installed,local]
libcap2/now 1:2.66-5ubuntu2.2 arm64 [installed,local]
libcbor0.10/now 0.10.2-1.2ubuntu2 arm64 [installed,local]
libcc1-0/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libcdio-cdda2t64/now 10.2+2.0.1-1.1build2 arm64 [installed,local]
libcdio-paranoia2t64/now 10.2+2.0.1-1.1build2 arm64 [installed,local]
libcdio19t64/now 2.1.0-4.1ubuntu1.2 arm64 [installed,local]
libchromaprint1/now 1.5.1-5 arm64 [installed,local]
libcjson1/now 1.7.17-1 arm64 [installed,local]
libcodec2-1.2/now 1.2.0-2build1 arm64 [installed,local]
libcom-err2/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
libcommons-logging-java/now 1.3.0-1ubuntu1 all [installed,local]
libcommons-parent-java/now 56-1 all [installed,local]
libcrypt-dev/now 1:4.4.36-4build1 arm64 [installed,local]
libcrypt1/now 1:4.4.36-4build1 arm64 [installed,local]
libctf-nobfd0/now 2.42-4ubuntu2.6 arm64 [installed,local]
libctf0/now 2.42-4ubuntu2.6 arm64 [installed,local]
libcups2t64/now 2.4.7-1.2ubuntu7.4 arm64 [installed,local]
libcurl3t64-gnutls/now 8.5.0-2ubuntu10.6 arm64 [installed,local]
libcurl4t64/now 8.5.0-2ubuntu10.6 arm64 [installed,local]
libdatrie1/now 0.2.13-3build1 arm64 [installed,local]
libdav1d7/now 1.4.1-1build1 arm64 [installed,local]
libdb5.3t64/now 5.3.28+dfsg2-7 arm64 [installed,local]
libdbus-1-3/now 1.14.10-4ubuntu4.1 arm64 [installed,local]
libdc1394-25/now 2.2.6-4build1 arm64 [installed,local]
libde265-0/now 1.0.15-1build3 arm64 [installed,local]
libdebconfclient0/now 0.271ubuntu3 arm64 [installed,local]
libdecor-0-0/now 0.2.2-1build2 arm64 [installed,local]
libdeflate0/now 1.19-1build1.1 arm64 [installed,local]
libdpkg-perl/now 1.22.6ubuntu6.5 all [installed,local]
libdrm-amdgpu1/now 2.4.122-1~ubuntu0.24.04.1 arm64 [installed,local]
libdrm-common/now 2.4.122-1~ubuntu0.24.04.1 all [installed,local]
libdrm2/now 2.4.122-1~ubuntu0.24.04.1 arm64 [installed,local]
libedit2/now 3.1-20230828-1build1 arm64 [installed,local]
libelf1t64/now 0.190-1.1ubuntu0.1 arm64 [installed,local]
liberror-perl/now 0.17029-2 all [installed,local]
libexpat1/now 2.6.1-2ubuntu0.3 arm64 [installed,local]
libext2fs2t64/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
libffi8/now 3.4.6-1build1 arm64 [installed,local]
libfftw3-double3/now 3.3.10-1ubuntu3 arm64 [installed,local]
libfido2-1/now 1.14.0-1build3 arm64 [installed,local]
libflac12t64/now 1.4.3+ds-2.1ubuntu2 arm64 [installed,local]
libflite1/now 2.2-6build3 arm64 [installed,local]
libfontbox-java/now 1:1.8.16-5 all [installed,local]
libfontconfig1/now 2.15.0-1.1ubuntu2 arm64 [installed,local]
libfontenc1/now 1:1.1.8-1build1 arm64 [installed,local]
libfreetype6/now 2.13.2+dfsg-1build3 arm64 [installed,local]
libfribidi0/now 1.0.13-3build1 arm64 [installed,local]
libgbm1/now 25.0.7-0ubuntu0.24.04.2 arm64 [installed,local]
libgcc-13-dev/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
libgcc-s1/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libgcrypt20/now 1.10.3-2build1 arm64 [installed,local]
libgd3/now 2.3.3-9ubuntu5 arm64 [installed,local]
libgdbm-compat4t64/now 1.23-5.1build1 arm64 [installed,local]
libgdbm6t64/now 1.23-5.1build1 arm64 [installed,local]
libgdk-pixbuf-2.0-0/now 2.42.10+dfsg-3ubuntu3.2 arm64 [installed,local]
libgdk-pixbuf2.0-common/now 2.42.10+dfsg-3ubuntu3.2 all [installed,local]
libgfortran-13-dev/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
libgfortran5/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libgl1-mesa-dri/now 25.0.7-0ubuntu0.24.04.2 arm64 [installed,local]
libgl1/now 1.7.0-1build1 arm64 [installed,local]
libglib2.0-0t64/now 2.80.0-6ubuntu3.4 arm64 [installed,local]
libglvnd0/now 1.7.0-1build1 arm64 [installed,local]
libglx-mesa0/now 25.0.7-0ubuntu0.24.04.2 arm64 [installed,local]
libglx0/now 1.7.0-1build1 arm64 [installed,local]
libgme0/now 0.6.3-7build1 arm64 [installed,local]
libgmp10/now 2:6.3.0+dfsg-2ubuntu6.1 arm64 [installed,local]
libgnutls30t64/now 3.8.3-1.1ubuntu3.4 arm64 [installed,local]
libgomp1/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libgpg-error0/now 1.47-3build2.1 arm64 [installed,local]
libgprofng0/now 2.42-4ubuntu2.6 arm64 [installed,local]
libgraphite2-3/now 1.3.14-2build1 arm64 [installed,local]
libgs-common/now 10.02.1~dfsg1-0ubuntu7.8 all [installed,local]
libgs10-common/now 10.02.1~dfsg1-0ubuntu7.8 all [installed,local]
libgs10/now 10.02.1~dfsg1-0ubuntu7.8 arm64 [installed,local]
libgsm1/now 1.0.22-1build1 arm64 [installed,local]
libgssapi-krb5-2/now 1.20.1-6ubuntu2.6 arm64 [installed,local]
libharfbuzz0b/now 8.3.0-2build2 arm64 [installed,local]
libheif-plugin-aomdec/now 1.17.6-1ubuntu4.1 arm64 [installed,local]
libheif-plugin-libde265/now 1.17.6-1ubuntu4.1 arm64 [installed,local]
libheif1/now 1.17.6-1ubuntu4.1 arm64 [installed,local]
libhogweed6t64/now 3.9.1-2.2build1.1 arm64 [installed,local]
libhwasan0/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libhwy1t64/now 1.0.7-8.1build1 arm64 [installed,local]
libice6/now 2:1.0.10-1build3 arm64 [installed,local]
libicu74/now 74.2-1ubuntu3.1 arm64 [installed,local]
libidn12/now 1.42-1build1 arm64 [installed,local]
libidn2-0/now 2.3.7-2build1.1 arm64 [installed,local]
libiec61883-0/now 1.2.0-6build1 arm64 [installed,local]
libijs-0.35/now 0.35-15.1build1 arm64 [installed,local]
libisl23/now 0.26-3build1.1 arm64 [installed,local]
libitm1/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libjack-jackd2-0/now 1.9.21~dfsg-3ubuntu3 arm64 [installed,local]
libjansson4/now 2.14-2build2 arm64 [installed,local]
libjbig0/now 2.1-6.1ubuntu2 arm64 [installed,local]
libjbig2dec0/now 0.20-1build3 arm64 [installed,local]
libjpeg-turbo8/now 2.1.5-2ubuntu2 arm64 [installed,local]
libjpeg8/now 8c-2ubuntu11 arm64 [installed,local]
libjxl0.7/now 0.7.0-10.2ubuntu6.1 arm64 [installed,local]
libk5crypto3/now 1.20.1-6ubuntu2.6 arm64 [installed,local]
libkeyutils1/now 1.6.3-3build1 arm64 [installed,local]
libkpathsea6/now 2023.20230311.66589-9build3 arm64 [installed,local]
libkrb5-3/now 1.20.1-6ubuntu2.6 arm64 [installed,local]
libkrb5support0/now 1.20.1-6ubuntu2.6 arm64 [installed,local]
liblapack3/now 3.12.0-3build1.1 arm64 [installed,local]
liblcms2-2/now 2.14-2build1 arm64 [installed,local]
libldap2/now 2.6.7+dfsg-1~exp1ubuntu8.2 arm64 [installed,local]
liblerc4/now 4.0.0+ds-4ubuntu2 arm64 [installed,local]
liblilv-0-0/now 0.24.22-1build1 arm64 [installed,local]
libllvm20/now 1:20.1.2-0ubuntu1~24.04.2 arm64 [installed,local]
liblsan0/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
liblua5.4-0/now 5.4.6-3build2 arm64 [installed,local]
liblz4-1/now 1.9.4-1build1.1 arm64 [installed,local]
liblzma5/now 5.6.1+really5.4.5-1ubuntu0.2 arm64 [installed,local]
libmbedcrypto7t64/now 2.28.8-1 arm64 [installed,local]
libmd0/now 1.1.0-2build1.1 arm64 [installed,local]
libmount1/now 2.39.3-9ubuntu6.3 arm64 [installed,local]
libmp3lame0/now 3.100-6build1 arm64 [installed,local]
libmpc3/now 1.3.1-1build1.1 arm64 [installed,local]
libmpfr6/now 4.2.1-1build1.1 arm64 [installed,local]
libmpg123-0t64/now 1.32.5-1ubuntu1.1 arm64 [installed,local]
libmysofa1/now 1.3.2+dfsg-2ubuntu2 arm64 [installed,local]
libncursesw6/now 6.4+20240113-1ubuntu2 arm64 [installed,local]
libnettle8t64/now 3.9.1-2.2build1.1 arm64 [installed,local]
libnghttp2-14/now 1.59.0-1ubuntu0.2 arm64 [installed,local]
libnorm1t64/now 1.5.9+dfsg-3.1build1 arm64 [installed,local]
libnpth0t64/now 1.6-3.1build1 arm64 [installed,local]
libnuma1/now 2.0.18-1build1 arm64 [installed,local]
libogg0/now 1.3.5-3build1 arm64 [installed,local]
libopenal-data/now 1:1.23.1-4build1 all [installed,local]
libopenal1/now 1:1.23.1-4build1 arm64 [installed,local]
libopenjp2-7/now 2.5.0-2ubuntu0.4 arm64 [installed,local]
libopenmpt0t64/now 0.7.3-1.1build3 arm64 [installed,local]
libopus0/now 1.4-1build1 arm64 [installed,local]
libp11-kit0/now 0.25.3-4ubuntu2.1 arm64 [installed,local]
libpam-modules-bin/now 1.5.3-5ubuntu5.5 arm64 [installed,local]
libpam-modules/now 1.5.3-5ubuntu5.5 arm64 [installed,local]
libpam-runtime/now 1.5.3-5ubuntu5.5 all [installed,local]
libpam0g/now 1.5.3-5ubuntu5.5 arm64 [installed,local]
libpango-1.0-0/now 1.52.1+ds-1build1 arm64 [installed,local]
libpangocairo-1.0-0/now 1.52.1+ds-1build1 arm64 [installed,local]
libpangoft2-1.0-0/now 1.52.1+ds-1build1 arm64 [installed,local]
libpaper-utils/now 1.1.29build1 arm64 [installed,local]
libpaper1/now 1.1.29build1 arm64 [installed,local]
libpcre2-8-0/now 10.42-4ubuntu2.1 arm64 [installed,local]
libpdfbox-java/now 1:1.8.16-5 all [installed,local]
libperl5.38t64/now 5.38.2-3.2ubuntu0.2 arm64 [installed,local]
libpgm-5.3-0t64/now 5.3.128~dfsg-2.1build1 arm64 [installed,local]
libpixman-1-0/now 0.42.2-1build1 arm64 [installed,local]
libplacebo338/now 6.338.2-2build1 arm64 [installed,local]
libpng16-16t64/now 1.6.43-5build1 arm64 [installed,local]
libpocketsphinx3/now 0.8.0+real5prealpha+1-15ubuntu5 arm64 [installed,local]
libpostproc57/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libpotrace0/now 1.16-2build1 arm64 [installed,local]
libproc2-0/now 2:4.0.4-4ubuntu3.2 arm64 [installed,local]
libpsl5t64/now 0.21.2-1.1build1 arm64 [installed,local]
libptexenc1/now 2023.20230311.66589-9build3 arm64 [installed,local]
libpulse0/now 1:16.1+dfsg1-2ubuntu10.1 arm64 [installed,local]
libpython3-stdlib/now 3.12.3-0ubuntu2 arm64 [installed,local]
libpython3.12-minimal/now 3.12.3-1ubuntu0.8 arm64 [installed,local]
libpython3.12-stdlib/now 3.12.3-1ubuntu0.8 arm64 [installed,local]
librabbitmq4/now 0.11.0-1build2 arm64 [installed,local]
librav1e0/now 0.7.1-2 arm64 [installed,local]
libraw1394-11/now 2.1.2-2build3 arm64 [installed,local]
libreadline8t64/now 8.2-4build1 arm64 [installed,local]
librist4/now 0.2.10+dfsg-2 arm64 [installed,local]
librsvg2-2/now 2.58.0+dfsg-1build1 arm64 [installed,local]
librtmp1/now 2.4+20151223.gitfa8646d.1-2build7 arm64 [installed,local]
librubberband2/now 3.3.0+dfsg-2build1 arm64 [installed,local]
libsamplerate0/now 0.2.2-4build1 arm64 [installed,local]
libsasl2-2/now 2.1.28+dfsg1-5ubuntu3.1 arm64 [installed,local]
libsasl2-modules-db/now 2.1.28+dfsg1-5ubuntu3.1 arm64 [installed,local]
libsdl2-2.0-0/now 2.30.0+dfsg-1ubuntu3.1 arm64 [installed,local]
libseccomp2/now 2.5.5-1ubuntu3.1 arm64 [installed,local]
libselinux1/now 3.5-2ubuntu2.1 arm64 [installed,local]
libsemanage-common/now 3.5-1build5 all [installed,local]
libsemanage2/now 3.5-1build5 arm64 [installed,local]
libsensors-config/now 1:3.6.0-9build1 all [installed,local]
libsensors5/now 1:3.6.0-9build1 arm64 [installed,local]
libsepol2/now 3.5-2build1 arm64 [installed,local]
libserd-0-0/now 0.32.2-1 arm64 [installed,local]
libsframe1/now 2.42-4ubuntu2.6 arm64 [installed,local]
libsharpyuv0/now 1.3.2-0.4build3 arm64 [installed,local]
libshine3/now 3.1.1-2build1 arm64 [installed,local]
libslang2/now 2.3.3-3build2 arm64 [installed,local]
libsm6/now 2:1.2.3-1build3 arm64 [installed,local]
libsmartcols1/now 2.39.3-9ubuntu6.3 arm64 [installed,local]
libsnappy1v5/now 1.1.10-1build1 arm64 [installed,local]
libsndfile1/now 1.2.2-1ubuntu5.24.04.1 arm64 [installed,local]
libsndio7.0/now 1.9.0-0.3build3 arm64 [installed,local]
libsodium23/now 1.0.18-1build3 arm64 [installed,local]
libsord-0-0/now 0.16.16-2build1 arm64 [installed,local]
libsoxr0/now 0.1.3-4build3 arm64 [installed,local]
libspeex1/now 1.2.1-2ubuntu2.24.04.1 arm64 [installed,local]
libsphinxbase3t64/now 0.8+5prealpha+1-17build2 arm64 [installed,local]
libsqlite3-0/now 3.45.1-1ubuntu2.5 arm64 [installed,local]
libsratom-0-0/now 0.6.16-1build1 arm64 [installed,local]
libsrt1.5-gnutls/now 1.5.3-1build2 arm64 [installed,local]
libss2/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
libssh-4/now 0.10.6-2ubuntu0.2 arm64 [installed,local]
libssh-gcrypt-4/now 0.10.6-2ubuntu0.2 arm64 [installed,local]
libssl3t64/now 3.0.13-0ubuntu3.6 arm64 [installed,local]
libstdc++-13-dev/now 13.3.0-6ubuntu2~24.04 arm64 [installed,local]
libstdc++6/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libsvtav1enc1d1/now 1.7.0+dfsg-2build1 arm64 [installed,local]
libswresample4/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libswscale7/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libsynctex2/now 2023.20230311.66589-9build3 arm64 [installed,local]
libsystemd0/now 255.4-1ubuntu8.11 arm64 [installed,local]
libtasn1-6/now 4.19.0-3ubuntu0.24.04.1 arm64 [installed,local]
libteckit0/now 2.5.12+ds1-1 arm64 [installed,local]
libtexlua53-5/now 2023.20230311.66589-9build3 arm64 [installed,local]
libthai-data/now 0.1.29-2build1 all [installed,local]
libthai0/now 0.1.29-2build1 arm64 [installed,local]
libtheora0/now 1.1.1+dfsg.1-16.1build3 arm64 [installed,local]
libtiff6/now 4.5.1+git230720-4ubuntu2.4 arm64 [installed,local]
libtinfo6/now 6.4+20240113-1ubuntu2 arm64 [installed,local]
libtsan2/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libtwolame0/now 0.4.0-2build3 arm64 [installed,local]
libubsan1/now 14.2.0-4ubuntu2~24.04 arm64 [installed,local]
libudev1/now 255.4-1ubuntu8.11 arm64 [installed,local]
libudfread0/now 1.1.2-1build1 arm64 [installed,local]
libunibreak5/now 5.1-2build1 arm64 [installed,local]
libunistring5/now 1.1-2build1.1 arm64 [installed,local]
libusb-1.0-0/now 2:1.0.27-1 arm64 [installed,local]
libuuid1/now 2.39.3-9ubuntu6.3 arm64 [installed,local]
libva-drm2/now 2.20.0-2build1 arm64 [installed,local]
libva-x11-2/now 2.20.0-2build1 arm64 [installed,local]
libva2/now 2.20.0-2build1 arm64 [installed,local]
libvdpau1/now 1.5-2build1 arm64 [installed,local]
libvidstab1.1/now 1.1.0-2build1 arm64 [installed,local]
libvorbis0a/now 1.3.7-1build3 arm64 [installed,local]
libvorbisenc2/now 1.3.7-1build3 arm64 [installed,local]
libvorbisfile3/now 1.3.7-1build3 arm64 [installed,local]
libvpx9/now 1.14.0-1ubuntu2.2 arm64 [installed,local]
libvulkan1/now 1.3.275.0-1build1 arm64 [installed,local]
libwayland-client0/now 1.22.0-2.1build1 arm64 [installed,local]
libwayland-cursor0/now 1.22.0-2.1build1 arm64 [installed,local]
libwayland-egl1/now 1.22.0-2.1build1 arm64 [installed,local]
libwayland-server0/now 1.22.0-2.1build1 arm64 [installed,local]
libwebp7/now 1.3.2-0.4build3 arm64 [installed,local]
libwebpmux3/now 1.3.2-0.4build3 arm64 [installed,local]
libx11-6/now 2:1.8.7-1build1 arm64 [installed,local]
libx11-data/now 2:1.8.7-1build1 all [installed,local]
libx11-xcb1/now 2:1.8.7-1build1 arm64 [installed,local]
libx264-164/now 2:0.164.3108+git31e19f9-1 arm64 [installed,local]
libx265-199/now 3.5-2build1 arm64 [installed,local]
libxau6/now 1:1.0.9-1build6 arm64 [installed,local]
libxaw7/now 2:1.0.14-1build2 arm64 [installed,local]
libxcb-dri3-0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-glx0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-present0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-randr0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-render0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-shape0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-shm0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-sync1/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb-xfixes0/now 1.15-1ubuntu2 arm64 [installed,local]
libxcb1/now 1.15-1ubuntu2 arm64 [installed,local]
libxcursor1/now 1:1.2.1-1build1 arm64 [installed,local]
libxdmcp6/now 1:1.1.3-0ubuntu6 arm64 [installed,local]
libxext6/now 2:1.3.4-1build2 arm64 [installed,local]
libxfixes3/now 1:6.0.0-2build1 arm64 [installed,local]
libxi6/now 2:1.8.1-1build1 arm64 [installed,local]
libxkbcommon0/now 1.6.0-1build1 arm64 [installed,local]
libxml2/now 2.9.14+dfsg-1.3ubuntu3.6 arm64 [installed,local]
libxmu6/now 2:1.1.3-3build2 arm64 [installed,local]
libxpm4/now 1:3.5.17-1build2 arm64 [installed,local]
libxrandr2/now 2:1.5.2-2build1 arm64 [installed,local]
libxrender1/now 1:0.9.10-1.1build1 arm64 [installed,local]
libxshmfence1/now 1.3-1build5 arm64 [installed,local]
libxss1/now 1:1.2.3-1build3 arm64 [installed,local]
libxt6t64/now 1:1.2.1-1.2build1 arm64 [installed,local]
libxv1/now 2:1.0.11-1.1build1 arm64 [installed,local]
libxvidcore4/now 2:1.3.7-1build1 arm64 [installed,local]
libxxf86vm1/now 1:1.1.4-1build4 arm64 [installed,local]
libxxhash0/now 0.8.2-2build1 arm64 [installed,local]
libyaml-0-2/now 0.2.5-1build1 arm64 [installed,local]
libzimg2/now 3.0.5+ds1-1build1 arm64 [installed,local]
libzix-0-0/now 0.4.2-2build1 arm64 [installed,local]
libzmq5/now 4.3.5-1build2 arm64 [installed,local]
libzstd1/now 1.5.5+dfsg2-2build1.1 arm64 [installed,local]
libzvbi-common/now 0.2.42-2 all [installed,local]
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libzzip-0-13t64/now 0.13.72+dfsg.1-1.2build1 arm64 [installed,local]
linux-libc-dev/now 6.8.0-87.88 arm64 [installed,local]
locales/now 2.39-0ubuntu8.6 all [installed,local]
login/now 1:4.13+dfsg1-4ubuntu3.2 arm64 [installed,local]
logsave/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
lto-disabled-list/now 47 all [installed,local]
make/now 4.3-4.1build2 arm64 [installed,local]
mawk/now 1.3.4.20240123-1build1 arm64 [installed,local]
media-types/now 10.1.0 all [installed,local]
mesa-libgallium/now 25.0.7-0ubuntu0.24.04.2 arm64 [installed,local]
mount/now 2.39.3-9ubuntu6.3 arm64 [installed,local]
nano-tiny/now 7.2-2ubuntu0.1 arm64 [installed,local]
ncurses-base/now 6.4+20240113-1ubuntu2 all [installed,local]
ncurses-bin/now 6.4+20240113-1ubuntu2 arm64 [installed,local]
netbase/now 6.4 all [installed,local]
ocl-icd-libopencl1/now 2.3.2-1build1 arm64 [installed,local]
openssh-client/now 1:9.6p1-3ubuntu13.14 arm64 [installed,local]
openssl/now 3.0.13-0ubuntu3.6 arm64 [installed,local]
pandoc-data/now 3.1.3-1 all [installed,local]
pandoc/now 3.1.3+ds-2 arm64 [installed,local]
passwd/now 1:4.13+dfsg1-4ubuntu3.2 arm64 [installed,local]
patch/now 2.7.6-7build3 arm64 [installed,local]
perl-base/now 5.38.2-3.2ubuntu0.2 arm64 [installed,local]
perl-modules-5.38/now 5.38.2-3.2ubuntu0.2 all [installed,local]
perl/now 5.38.2-3.2ubuntu0.2 arm64 [installed,local]
pfb2t1c2pfb/now 0.3-11build1 arm64 [installed,local]
poppler-data/now 0.4.12-1 all [installed,local]
preview-latex-style/now 13.2-1 all [installed,local]
procps/now 2:4.0.4-4ubuntu3.2 arm64 [installed,local]
python3-minimal/now 3.12.3-0ubuntu2 arm64 [installed,local]
python3.12-minimal/now 3.12.3-1ubuntu0.8 arm64 [installed,local]
python3.12/now 3.12.3-1ubuntu0.8 arm64 [installed,local]
python3/now 3.12.3-0ubuntu2 arm64 [installed,local]
readline-common/now 8.2-4build1 all [installed,local]
rpcsvc-proto/now 1.4.2-0ubuntu7 arm64 [installed,local]
run-one/now 1.17-0ubuntu2 all [installed,local]
sed/now 4.9-2build1 arm64 [installed,local]
sensible-utils/now 0.0.22 all [installed,local]
shared-mime-info/now 2.4-4 arm64 [installed,local]
sudo/now 1.9.15p5-3ubuntu5.24.04.1 arm64 [installed,local]
sysvinit-utils/now 3.08-6ubuntu3 arm64 [installed,local]
t1utils/now 1.41-4build3 arm64 [installed,local]
tar/now 1.35+dfsg-3build1 arm64 [installed,local]
teckit/now 2.5.12+ds1-1 arm64 [installed,local]
tex-common/now 6.18 all [installed,local]
texlive-base/now 2023.20240207-1 all [installed,local]
texlive-binaries/now 2023.20230311.66589-9build3 arm64 [installed,local]
texlive-fonts-recommended/now 2023.20240207-1 all [installed,local]
texlive-latex-base/now 2023.20240207-1 all [installed,local]
texlive-latex-extra/now 2023.20240207-1 all [installed,local]
texlive-latex-recommended/now 2023.20240207-1 all [installed,local]
texlive-pictures/now 2023.20240207-1 all [installed,local]
texlive-plain-generic/now 2023.20240207-1 all [installed,local]
texlive-xetex/now 2023.20240207-1 all [installed,local]
tini/now 0.19.0-1 arm64 [installed,local]
tipa/now 2:1.3-21 all [installed,local]
tzdata/now 2025b-0ubuntu0.24.04.1 all [installed,local]
ubuntu-keyring/now 2023.11.28.1 all [installed,local]
ucf/now 3.0043+nmu1 all [installed,local]
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unzip/now 6.0-28ubuntu4.1 arm64 [installed,local]
util-linux/now 2.39.3-9ubuntu6.3 arm64 [installed,local]
vim-common/now 2:9.1.0016-1ubuntu7.9 all [installed,local]
vim-tiny/now 2:9.1.0016-1ubuntu7.9 arm64 [installed,local]
wget/now 1.21.4-1ubuntu4.1 arm64 [installed,local]
x11-common/now 1:7.7+23ubuntu3 all [installed,local]
xclip/now 0.13-3 arm64 [installed,local]
xdg-utils/now 1.1.3-4.1ubuntu3 all [installed,local]
xfonts-encodings/now 1:1.0.5-0ubuntu2 all [installed,local]
xfonts-utils/now 1:7.7+6build3 arm64 [installed,local]
xkb-data/now 2.41-2ubuntu1.1 all [installed,local]
xz-utils/now 5.6.1+really5.4.5-1ubuntu0.2 arm64 [installed,local]
zlib1g/now 1:1.3.dfsg-3.1ubuntu2.1 arm64 [installed,local]
R --version:
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-conda-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
https://www.gnu.org/licenses/.
R --silent -e 'installed.packages(.Library)[, c(1,3)]':
> installed.packages(.Library)[, c(1,3)]
Package Version
abind "abind" "1.4-8"
anndata "anndata" "0.7.5.6"
AnnotationDbi "AnnotationDbi" "1.68.0"
AnnotationFilter "AnnotationFilter" "1.30.0"
askpass "askpass" "1.2.1"
assertthat "assertthat" "0.2.1"
assorthead "assorthead" "1.0.0"
backports "backports" "1.5.0"
base "base" "4.4.3"
base64enc "base64enc" "0.1-3"
basilisk "basilisk" "1.18.0"
basilisk.utils "basilisk.utils" "1.18.0"
beachmat "beachmat" "2.22.0"
beeswarm "beeswarm" "0.4.0"
BH "BH" "1.87.0-1"
Biobase "Biobase" "2.66.0"
BiocFileCache "BiocFileCache" "2.14.0"
BiocGenerics "BiocGenerics" "0.52.0"
BiocIO "BiocIO" "1.16.0"
BiocManager "BiocManager" "1.30.26"
BiocNeighbors "BiocNeighbors" "2.0.0"
BiocParallel "BiocParallel" "1.40.0"
BiocSingular "BiocSingular" "1.22.0"
BiocVersion "BiocVersion" "3.20.0"
biocViews "biocViews" "1.74.0"
biomaRt "biomaRt" "2.62.0"
Biostrings "Biostrings" "2.74.0"
biovizBase "biovizBase" "1.54.0"
bit "bit" "4.6.0"
bit64 "bit64" "4.6.0-1"
bitops "bitops" "1.0-9"
blob "blob" "1.2.4"
bluster "bluster" "1.16.0"
boot "boot" "1.3-32"
brew "brew" "1.0-10"
brio "brio" "1.1.5"
broom "broom" "1.0.10"
broom.helpers "broom.helpers" "1.22.0"
BSgenome "BSgenome" "1.74.0"
bslib "bslib" "0.9.0"
cachem "cachem" "1.1.0"
Cairo "Cairo" "1.7-0"
callr "callr" "3.7.6"
car "car" "3.1-3"
carData "carData" "3.0-5"
cards "cards" "0.7.0"
caret "caret" "7.0-1"
caTools "caTools" "1.18.3"
CellChat "CellChat" "2.2.0"
cellranger "cellranger" "1.1.0"
checkmate "checkmate" "2.3.3"
circlize "circlize" "0.4.16"
class "class" "7.3-23"
cli "cli" "3.6.5"
clipr "clipr" "0.8.0"
clock "clock" "0.7.3"
clue "clue" "0.3-66"
cluster "cluster" "2.1.8.1"
coda "coda" "0.19-4.1"
codetools "codetools" "0.2-20"
collections "collections" "0.3.9"
colorspace "colorspace" "2.1-2"
combinat "combinat" "0.0-8"
commonmark "commonmark" "2.0.0"
compiler "compiler" "4.4.3"
ComplexHeatmap "ComplexHeatmap" "2.22.0"
conflicted "conflicted" "1.2.0"
conquer "conquer" "1.3.3"
corrplot "corrplot" "0.95"
cowplot "cowplot" "1.2.0"
cpp11 "cpp11" "0.5.2"
crayon "crayon" "1.5.3"
credentials "credentials" "2.0.3"
crosstalk "crosstalk" "1.2.2"
curl "curl" "7.0.0"
cyclocomp "cyclocomp" "1.1.1"
data.table "data.table" "1.17.8"
datasets "datasets" "4.4.3"
DBI "DBI" "1.2.3"
dbplyr "dbplyr" "2.5.1"
DDRTree "DDRTree" "0.1.5"
DelayedArray "DelayedArray" "0.32.0"
deldir "deldir" "2.0-4"
Deriv "Deriv" "4.2.0"
desc "desc" "1.4.3"
DESeq2 "DESeq2" "1.46.0"
devtools "devtools" "2.4.6"
diagram "diagram" "1.6.5"
dials "dials" "1.4.2"
DiceDesign "DiceDesign" "1.10"
dichromat "dichromat" "2.0-0.1"
diffobj "diffobj" "0.3.6"
digest "digest" "0.6.37"
dir.expiry "dir.expiry" "1.14.0"
doBy "doBy" "4.7.0"
doParallel "doParallel" "1.0.17"
dotCall64 "dotCall64" "1.2"
downlit "downlit" "0.4.4"
dplyr "dplyr" "1.1.4"
dqrng "dqrng" "0.3.2"
dtplyr "dtplyr" "1.3.2"
e1071 "e1071" "1.7-16"
edgeR "edgeR" "4.4.0"
ellipsis "ellipsis" "0.3.2"
ensembldb "ensembldb" "2.30.0"
evaluate "evaluate" "1.0.5"
fansi "fansi" "1.0.6"
farver "farver" "2.1.2"
fastcluster "fastcluster" "1.3.0"
fastDummies "fastDummies" "1.7.5"
fastICA "fastICA" "1.2-7"
fastmap "fastmap" "1.2.0"
fastmatch "fastmatch" "1.1-6"
fgsea "fgsea" "1.32.2"
filelock "filelock" "1.0.3"
fitdistrplus "fitdistrplus" "1.2-4"
FNN "FNN" "1.1.4.1"
fontawesome "fontawesome" "0.5.3"
forcats "forcats" "1.0.1"
foreach "foreach" "1.5.2"
forecast "forecast" "8.24.0"
foreign "foreign" "0.8-90"
formatR "formatR" "1.14"
Formula "Formula" "1.2-5"
fracdiff "fracdiff" "1.5-3"
fs "fs" "1.6.6"
furrr "furrr" "0.3.1"
futile.logger "futile.logger" "1.4.3"
futile.options "futile.options" "1.0.1"
future "future" "1.67.0"
future.apply "future.apply" "1.20.0"
gargle "gargle" "1.6.0"
gbRd "gbRd" "0.4.12"
generics "generics" "0.1.4"
GenomeInfoDb "GenomeInfoDb" "1.42.0"
GenomeInfoDbData "GenomeInfoDbData" "1.2.13"
GenomicAlignments "GenomicAlignments" "1.42.0"
GenomicFeatures "GenomicFeatures" "1.58.0"
GenomicRanges "GenomicRanges" "1.58.0"
gert "gert" "2.1.5"
GetoptLong "GetoptLong" "1.0.5"
ggalluvial "ggalluvial" "0.12.5"
GGally "GGally" "2.4.0"
ggbeeswarm "ggbeeswarm" "0.7.2"
ggforce "ggforce" "0.5.0"
ggnetwork "ggnetwork" "0.5.14"
ggplot2 "ggplot2" "4.0.0"
ggprism "ggprism" "1.0.7"
ggpubr "ggpubr" "0.6.2"
ggraph "ggraph" "2.2.2"
ggrastr "ggrastr" "1.0.2"
ggrepel "ggrepel" "0.9.6"
ggridges "ggridges" "0.5.7"
ggsci "ggsci" "4.1.0"
ggsignif "ggsignif" "0.6.4"
ggstats "ggstats" "0.11.0"
ggvenn "ggvenn" "0.1.19"
gh "gh" "1.5.0"
gitcreds "gitcreds" "0.1.2"
GlobalOptions "GlobalOptions" "0.1.2"
globals "globals" "0.18.0"
glue "glue" "1.8.0"
goftest "goftest" "1.2-3"
googledrive "googledrive" "2.1.2"
googlesheets4 "googlesheets4" "1.1.2"
gower "gower" "1.0.1"
GPfit "GPfit" "1.0-9"
gplots "gplots" "3.2.0"
graph "graph" "1.84.0"
graphics "graphics" "4.4.3"
graphlayouts "graphlayouts" "1.2.2"
grDevices "grDevices" "4.4.3"
grid "grid" "4.4.3"
gridBase "gridBase" "0.4-7"
gridExtra "gridExtra" "2.3"
grImport "grImport" "0.9-7"
gtable "gtable" "0.3.6"
gtools "gtools" "3.9.5"
Gviz "Gviz" "1.50.0"
hardhat "hardhat" "1.4.2"
haven "haven" "2.5.5"
HDF5Array "HDF5Array" "1.34.0"
here "here" "1.0.2"
hexbin "hexbin" "1.28.5"
highr "highr" "0.11"
Hmisc "Hmisc" "5.2-4"
hms "hms" "1.1.4"
HSMMSingleCell "HSMMSingleCell" "1.26.0"
htmlTable "htmlTable" "2.4.3"
htmltools "htmltools" "0.5.8.1"
htmlwidgets "htmlwidgets" "1.6.4"
httpuv "httpuv" "1.6.16"
httr "httr" "1.4.7"
httr2 "httr2" "1.2.1"
ica "ica" "1.0-3"
ids "ids" "1.0.1"
igraph "igraph" "2.1.4"
infer "infer" "1.0.9"
ini "ini" "0.3.1"
InteractionSet "InteractionSet" "1.34.0"
interp "interp" "1.1-6"
ipred "ipred" "0.9-15"
IRanges "IRanges" "2.40.0"
IRdisplay "IRdisplay" "1.1"
IRkernel "IRkernel" "1.3.2"
irlba "irlba" "2.3.5.1"
isoband "isoband" "0.2.7"
iterators "iterators" "1.0.14"
janitor "janitor" "2.2.1"
jpeg "jpeg" "0.1-11"
jquerylib "jquerylib" "0.1.4"
jsonlite "jsonlite" "2.0.0"
KEGGREST "KEGGREST" "1.46.0"
kernlab "kernlab" "0.9-33"
KernSmooth "KernSmooth" "2.23-26"
knitr "knitr" "1.50"
ks "ks" "1.15.1"
labeling "labeling" "0.4.3"
labelled "labelled" "2.16.0"
lambda.r "lambda.r" "1.2.4"
languageserver "languageserver" "0.3.16"
later "later" "1.4.4"
lattice "lattice" "0.22-7"
latticeExtra "latticeExtra" "0.6-31"
lava "lava" "1.8.2"
lazyeval "lazyeval" "0.2.2"
leidenbase "leidenbase" "0.1.35"
lhs "lhs" "1.2.0"
lifecycle "lifecycle" "1.0.4"
limma "limma" "3.62.1"
lintr "lintr" "3.2.0"
listenv "listenv" "0.10.0"
lme4 "lme4" "1.1-37"
lmtest "lmtest" "0.9-40"
locfit "locfit" "1.5-9.12"
LoomExperiment "LoomExperiment" "1.24.0"
lubridate "lubridate" "1.9.4"
magrittr "magrittr" "2.0.4"
MASS "MASS" "7.3-65"
MAST "MAST" "1.32.0"
Matrix "Matrix" "1.7-4"
MatrixGenerics "MatrixGenerics" "1.18.0"
MatrixModels "MatrixModels" "0.5-4"
matrixStats "matrixStats" "1.5.0"
mclust "mclust" "6.1.2"
memoise "memoise" "2.0.1"
metapod "metapod" "1.14.0"
methods "methods" "4.4.3"
mgcv "mgcv" "1.9-3"
microbenchmark "microbenchmark" "1.5.0"
miloR "miloR" "2.2.0"
mime "mime" "0.13"
miniUI "miniUI" "0.1.2"
minqa "minqa" "1.2.8"
misc3d "misc3d" "0.9-1"
modeldata "modeldata" "1.5.1"
modelenv "modelenv" "0.2.0"
ModelMetrics "ModelMetrics" "1.2.2.2"
modelr "modelr" "0.1.11"
monocle "monocle" "2.34.0"
multicool "multicool" "1.0.1"
munsell "munsell" "0.5.1"
mvtnorm "mvtnorm" "1.3-3"
Nebulosa "Nebulosa" "1.16.0"
network "network" "1.19.0"
nlme "nlme" "3.1-168"
nloptr "nloptr" "2.2.1"
NMF "NMF" "0.28"
nnet "nnet" "7.3-20"
numDeriv "numDeriv" "2016.8-1.1"
nycflights13 "nycflights13" "1.0.2"
openssl "openssl" "2.3.4"
openxlsx "openxlsx" "4.2.8.1"
otel "otel" "0.2.0"
paletteer "paletteer" "1.6.0"
parallel "parallel" "4.4.3"
parallelDist "parallelDist" "0.2.7"
parallelly "parallelly" "1.45.1"
parsnip "parsnip" "1.3.3"
patchwork "patchwork" "1.3.2"
pbapply "pbapply" "1.7-4"
pbdZMQ "pbdZMQ" "0.3-14"
pbkrtest "pbkrtest" "0.5.5"
pheatmap "pheatmap" "1.0.13"
pillar "pillar" "1.11.1"
pkgbuild "pkgbuild" "1.4.8"
pkgconfig "pkgconfig" "2.0.3"
pkgdown "pkgdown" "2.1.3"
pkgload "pkgload" "1.4.1"
plogr "plogr" "0.2.0"
plot3D "plot3D" "1.4.2"
plotly "plotly" "4.11.0"
plyr "plyr" "1.8.9"
png "png" "0.1-8"
polyclip "polyclip" "1.10-7"
polynom "polynom" "1.4-1"
pracma "pracma" "2.4.6"
praise "praise" "1.0.0"
presto "presto" "1.0.0"
prettyunits "prettyunits" "1.2.0"
prismatic "prismatic" "1.1.2"
pROC "pROC" "1.19.0.1"
processx "processx" "3.8.6"
prodlim "prodlim" "2025.04.28"
profvis "profvis" "0.4.0"
progress "progress" "1.2.3"
progressr "progressr" "0.17.0"
promises "promises" "1.5.0"
ProtGenerics "ProtGenerics" "1.38.0"
proxy "proxy" "0.4-27"
ps "ps" "1.9.1"
purrr "purrr" "1.1.0"
quadprog "quadprog" "1.5-8"
quantmod "quantmod" "0.4.28"
quantreg "quantreg" "6.1"
R.cache "R.cache" "0.17.0"
R.methodsS3 "R.methodsS3" "1.8.2"
R.oo "R.oo" "1.27.1"
R.utils "R.utils" "2.13.0"
R6 "R6" "2.6.1"
ragg "ragg" "1.5.0"
randomForest "randomForest" "4.7-1.2"
RANN "RANN" "2.6.2"
rappdirs "rappdirs" "0.3.3"
RBGL "RBGL" "1.82.0"
rbibutils "rbibutils" "2.3"
rcmdcheck "rcmdcheck" "1.4.0"
RColorBrewer "RColorBrewer" "1.1-3"
Rcpp "Rcpp" "1.1.0"
RcppAnnoy "RcppAnnoy" "0.0.22"
RcppArmadillo "RcppArmadillo" "15.0.2-2"
RcppEigen "RcppEigen" "0.3.4.0.2"
RcppHNSW "RcppHNSW" "0.6.0"
RcppML "RcppML" "0.3.7"
RcppParallel "RcppParallel" "5.1.11-1"
RcppProgress "RcppProgress" "0.4.2"
RcppTOML "RcppTOML" "0.2.3"
RCurl "RCurl" "1.98-1.17"
Rdpack "Rdpack" "2.6.4"
readr "readr" "2.1.5"
readxl "readxl" "1.4.5"
recipes "recipes" "1.3.1"
reformulas "reformulas" "0.4.2"
registry "registry" "0.5-1"
rematch "rematch" "2.0.0"
rematch2 "rematch2" "2.1.2"
remotes "remotes" "2.5.0"
repr "repr" "1.1.7"
reprex "reprex" "2.1.1"
reshape2 "reshape2" "1.4.4"
restfulr "restfulr" "0.0.16"
reticulate "reticulate" "1.44.0"
rex "rex" "1.2.1"
rhdf5 "rhdf5" "2.50.0"
rhdf5filters "rhdf5filters" "1.18.0"
Rhdf5lib "Rhdf5lib" "1.28.0"
Rhtslib "Rhtslib" "3.2.0"
rjson "rjson" "0.2.23"
rlang "rlang" "1.1.6"
rmarkdown "rmarkdown" "2.30"
rngtools "rngtools" "1.5.2"
ROCR "ROCR" "1.0-11"
RODBC "RODBC" "1.3-26"
roxygen2 "roxygen2" "7.3.3"
rpart "rpart" "4.1.24"
rprojroot "rprojroot" "2.1.1"
rsample "rsample" "1.3.1"
Rsamtools "Rsamtools" "2.22.0"
RSpectra "RSpectra" "0.16-2"
RSQLite "RSQLite" "2.4.3"
rstatix "rstatix" "0.7.3"
rstudioapi "rstudioapi" "0.17.1"
rsvd "rsvd" "1.0.5"
rtracklayer "rtracklayer" "1.66.0"
Rtsne "Rtsne" "0.17"
RUnit "RUnit" "0.4.33.1"
rversions "rversions" "3.0.0"
rvest "rvest" "1.0.5"
S4Arrays "S4Arrays" "1.6.0"
S4Vectors "S4Vectors" "0.44.0"
S7 "S7" "0.2.0"
sass "sass" "0.4.10"
ScaledMatrix "ScaledMatrix" "1.14.0"
scales "scales" "1.4.0"
scater "scater" "1.34.1"
scattermore "scattermore" "1.2"
scCustomize "scCustomize" "3.2.0"
sceasy "sceasy" "0.0.7"
scran "scran" "1.34.0"
sctransform "sctransform" "0.4.2"
scuttle "scuttle" "1.16.0"
selectr "selectr" "0.4-2"
sessioninfo "sessioninfo" "1.2.3"
Seurat "Seurat" "5.3.1"
SeuratObject "SeuratObject" "5.2.0"
sfd "sfd" "0.1.0"
shape "shape" "1.4.6.1"
shiny "shiny" "1.11.1"
SingleCellExperiment "SingleCellExperiment" "1.28.0"
sitmo "sitmo" "2.0.2"
slam "slam" "0.1-55"
slider "slider" "0.3.2"
sna "sna" "2.8"
snakecase "snakecase" "0.11.1"
snow "snow" "0.4-4"
sourcetools "sourcetools" "0.1.7-1"
sp "sp" "2.2-0"
spam "spam" "2.11-1"
SparseArray "SparseArray" "1.6.0"
SparseM "SparseM" "1.84-2"
sparsevctrs "sparsevctrs" "0.3.4"
spatstat.data "spatstat.data" "3.1-9"
spatstat.explore "spatstat.explore" "3.5-3"
spatstat.geom "spatstat.geom" "3.6-0"
spatstat.random "spatstat.random" "3.4-2"
spatstat.sparse "spatstat.sparse" "3.1-0"
spatstat.univar "spatstat.univar" "3.1-4"
spatstat.utils "spatstat.utils" "3.2-0"
splines "splines" "4.4.3"
SQUAREM "SQUAREM" "2021.1"
statmod "statmod" "1.5.1"
statnet.common "statnet.common" "4.12.0"
stats "stats" "4.4.3"
stats4 "stats4" "4.4.3"
strawr "strawr" "0.0.92"
stringi "stringi" "1.8.7"
stringr "stringr" "1.5.2"
styler "styler" "1.11.0"
SummarizedExperiment "SummarizedExperiment" "1.36.0"
survival "survival" "3.8-3"
svglite "svglite" "2.2.2"
sys "sys" "3.4.3"
systemfonts "systemfonts" "1.3.1"
tailor "tailor" "0.1.0"
tcltk "tcltk" "4.4.3"
tensor "tensor" "1.5.1"
testthat "testthat" "3.2.3"
textshaping "textshaping" "1.0.4"
tibble "tibble" "3.3.0"
tidygraph "tidygraph" "1.3.1"
tidymodels "tidymodels" "1.4.1"
tidyr "tidyr" "1.3.1"
tidyselect "tidyselect" "1.2.1"
tidyverse "tidyverse" "2.0.0"
timechange "timechange" "0.3.0"
timeDate "timeDate" "4051.111"
tinytex "tinytex" "0.57"
tools "tools" "4.4.3"
trackViewer "trackViewer" "1.42.0"
tseries "tseries" "0.10-58"
TTR "TTR" "0.24.4"
tune "tune" "2.0.1"
tweenr "tweenr" "2.0.3"
txdbmaker "txdbmaker" "1.2.0"
tzdb "tzdb" "0.5.0"
UCSC.utils "UCSC.utils" "1.2.0"
urca "urca" "1.3-4"
urlchecker "urlchecker" "1.0.1"
usethis "usethis" "3.2.1"
utf8 "utf8" "1.2.6"
utils "utils" "4.4.3"
uuid "uuid" "1.2-1"
uwot "uwot" "0.2.3"
VariantAnnotation "VariantAnnotation" "1.52.0"
vctrs "vctrs" "0.6.5"
VGAM "VGAM" "1.1-13"
vipor "vipor" "0.4.7"
viridis "viridis" "0.6.5"
viridisLite "viridisLite" "0.4.2"
vroom "vroom" "1.6.6"
waldo "waldo" "0.6.2"
warp "warp" "0.2.1"
whisker "whisker" "0.4.1"
withr "withr" "3.0.2"
workflows "workflows" "1.3.0"
workflowsets "workflowsets" "1.1.1"
writexl "writexl" "1.5.4"
xfun "xfun" "0.54"
XML "XML" "3.99-0.17"
xml2 "xml2" "1.4.1"
xmlparsedata "xmlparsedata" "1.0.5"
xopen "xopen" "1.0.1"
xtable "xtable" "1.8-4"
xts "xts" "0.14.1"
XVector "XVector" "0.46.0"
yaml "yaml" "2.3.10"
yardstick "yardstick" "1.3.2"
zellkonverter "zellkonverter" "1.16.0"
zip "zip" "2.3.3"
zlibbioc "zlibbioc" "1.52.0"
zoo "zoo" "1.8-14"
>
>
julia -E 'using InteractiveUtils; versioninfo()':
Julia Version 1.12.1
Commit ba1e628ee49 (2025-10-17 13:02 UTC)
Build Info:
Official https://julialang.org release
Platform Info:
OS: Linux (aarch64-linux-gnu)
CPU: 4 × unknown
WORD_SIZE: 64
LLVM: libLLVM-18.1.7 (ORCJIT, neoverse-n2)
GC: Built with stock GC
Threads: 1 default, 1 interactive, 1 GC (on 4 virtual cores)
Environment:
JULIA_DEPOT_PATH = /opt/julia
JULIA_PKGDIR = /opt/julia
nothing
julia -E 'import Pkg; Pkg.status()':
Status `/opt/julia/environments/v1.12/Project.toml`
[f67ccb44] HDF5 v0.17.2
[7073ff75] IJulia v1.31.1
[c3e4b0f8] Pluto v0.20.20
nothing