aarch64 cuda13 spatial gpu notebook 27c339a91f64 - huchlab/sequencing-docker-stacks GitHub Wiki
- Build timestamp: 2026-03-16T05:43:55Z
- Docker image:
quay.io/huchlab/spatial-gpu-notebook:27c339a91f64 - Docker image size: 46.1GB
- Git commit SHA: 27c339a91f64bd5bc5bc38fda19efe78d1dc53cf
- Git commit message:
[FAST_BUILD] Bump docker/login-action in /.github/actions/load-image (#684)
Bumps [docker/login-action](https://github.com/docker/login-action) from 3.7.0 to 4.0.0.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](https://github.com/docker/login-action/compare/c94ce9fb468520275223c153574b00df6fe4bcc9...b45d80f862d83dbcd57f89517bcf500b2ab88fb2)
---
updated-dependencies:
- dependency-name: docker/login-action
dependency-version: 4.0.0
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Python 3.13.12
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Name Version Build Channel
─────────────────────────────────────────────────────────────────────────────────────────────────────────────────
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simdjson 4.2.4 hfefdfc9_0 conda-forge
simpervisor 1.0.0 pyhd8ed1ab_1 conda-forge
sip 6.15.2 py313had7344c_0 conda-forge
six 1.17.0 pyhe01879c_1 conda-forge
sleef 3.9.0 h5bb93e2_0 conda-forge
slepc 3.23.2 real_h28bc750_1 conda-forge
slepc4py 3.23.2 np2py313h3333b59_1 conda-forge
slicerator 1.1.0 pypi_0 pypi
smmap 5.0.2 pyhd8ed1ab_0 conda-forge
snappy 1.2.2 he774c54_1 conda-forge
sniffio 1.3.1 pyhd8ed1ab_2 conda-forge
snowballstemmer 3.0.1 pypi_0 pypi
sortedcontainers 2.4.0 pyhd8ed1ab_1 conda-forge
soupsieve 2.8.3 pyhd8ed1ab_0 conda-forge
sparse 0.18.0 pyhcf101f3_0 conda-forge
spatial-image 1.2.3 pyhd8ed1ab_1 conda-forge
spatialdata 0.7.2 pypi_0 pypi
spatialdata-io 0.6.0 pypi_0 pypi
spatialdata-plot 0.2.14 pypi_0 pypi
spdlog 1.17.0 h9f97df7_1 conda-forge
sphinxcontrib-applehelp 2.0.0 pypi_0 pypi
sphinxcontrib-devhelp 2.0.0 pypi_0 pypi
sphinxcontrib-htmlhelp 2.1.0 pypi_0 pypi
sphinxcontrib-jsmath 1.0.1 pypi_0 pypi
sphinxcontrib-qthelp 2.0.0 pypi_0 pypi
sphinxcontrib-serializinghtml 2.0.0 pypi_0 pypi
spirv-tools 2026.1 hfefdfc9_0 conda-forge
sqlalchemy 2.0.48 py313hc37f9cf_0 conda-forge
sqlite 3.52.0 hf1c7be2_0 conda-forge
squidpy 1.8.1 pypi_0 pypi
stack_data 0.6.3 pyhd8ed1ab_1 conda-forge
starlette 0.52.1 pypi_0 pypi
statsmodels 0.14.6 py313hcc1970c_0 conda-forge
stdlib-list 0.12.0 pyhd8ed1ab_0 conda-forge
streamz 0.6.5 pyh332efcf_0 conda-forge
superlu 7.0.1 h8effc92_0 conda-forge
superlu_dist 9.1.0 h34d569a_0 conda-forge
superqt 0.8.0 pypi_0 pypi
svt-av1 4.0.1 hfae3067_0 conda-forge
sympy 1.14.0 pyh2585a3b_106 conda-forge
sysroot_linux-aarch64 2.39 h934ec21_6 conda-forge
tabulate 0.10.0 pyhcf101f3_0 conda-forge
tangram-sc 1.0.4 pypi_0 pypi
tbb 2022.3.0 h0eac15c_1 conda-forge
tbb-devel 2022.3.0 h828ce58_1 conda-forge
tblib 3.2.2 pyhcf101f3_0 conda-forge
tenacity 9.1.4 pyhcf101f3_0 conda-forge
tensorboard 2.20.0 pyhe01879c_0 conda-forge
tensorboard-data-server 0.7.0 py313hba2fb49_4 conda-forge
terminado 0.18.1 pyhc90fa1f_1 conda-forge
texttable 1.7.0 pyhd8ed1ab_1 conda-forge
threadpoolctl 3.6.0 pyhecae5ae_0 conda-forge
tifffile 2026.3.3 pyhd8ed1ab_0 conda-forge
tinycss2 1.4.0 pyhd8ed1ab_0 conda-forge
tk 8.6.13 noxft_h0dc03b3_103 conda-forge
tktable 2.10 h89546af_7 conda-forge
toml 0.10.2 pyhcf101f3_3 conda-forge
tomli 2.4.0 pyhcf101f3_0 conda-forge
tomli_w 1.2.0 pypi_0 pypi
tomlkit 0.14.0 pyha770c72_0 conda-forge
toolz 1.1.0 pyhd8ed1ab_1 conda-forge
torch 2.10.0 pypi_0 pypi
torchaudio 2.10.0 pypi_0 pypi
torchmetrics 1.8.2 pyhd8ed1ab_0 conda-forge
torchvision 0.25.0 pypi_0 pypi
tornado 6.5.4 py313ha35ba76_0 conda-forge
tqdm 4.67.3 pyh8f84b5b_0 conda-forge
trackhub 1.0 pyh7cba7a3_0 bioconda
traitlets 5.14.3 pyhd8ed1ab_1 conda-forge
treelite 4.7.0 py313h71b7790_0 conda-forge
triton 3.5.1 pypi_0 pypi
truststore 0.10.4 pyhcf101f3_0 conda-forge
typeguard 4.5.1 pypi_0 pypi
typer 0.24.1 pypi_0 pypi
typing-extensions 4.15.0 h396c80c_0 conda-forge
typing-inspection 0.4.2 pyhd8ed1ab_1 conda-forge
typing_extensions 4.15.0 pyhcf101f3_0 conda-forge
typing_utils 0.1.0 pyhd8ed1ab_1 conda-forge
tzdata 2025c hc9c84f9_1 conda-forge
tzlocal 5.3.1 pyh8f84b5b_0 conda-forge
uc-micro-py 2.0.0 pyhcf101f3_0 conda-forge
ucx 1.19.1 h7c31d6f_0 conda-forge
ucxx 0.47.00 cuda13_py313_251210_5d6f0af3 rapidsai
ujson 5.11.0 pypi_0 pypi
umap-learn 0.5.11 py313hd81a959_0 conda-forge
universal_pathlib 0.3.10 pypi_0 pypi
unixodbc 2.3.14 h1344786_0 conda-forge
uri-template 1.3.0 pyhd8ed1ab_1 conda-forge
uriparser 0.9.8 h0a1ffab_0 conda-forge
urllib3 2.6.3 pyhd8ed1ab_0 conda-forge
uv 0.10.9 hf7c115b_0 conda-forge
uvicorn 0.41.0 pypi_0 pypi
validators 0.35.0 pypi_0 pypi
vispy 0.15.2 pypi_0 pypi
vitessce 3.8.2 pypi_0 pypi
wayland 1.24.0 h4f8a99f_1 conda-forge
wcwidth 0.6.0 pyhd8ed1ab_0 conda-forge
webcolors 25.10.0 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 pyhd8ed1ab_3 conda-forge
websocket-client 1.9.0 pyhd8ed1ab_0 conda-forge
werkzeug 3.1.6 pyhcf101f3_0 conda-forge
wget 3.2 pypi_0 pypi
widgetsnbextension 4.0.15 pyhd8ed1ab_0 conda-forge
wrapt 2.1.2 py313h6194ac5_0 conda-forge
x264 1!164.3095 h4e544f5_2 conda-forge
x265 3.5 hdd96247_3 conda-forge
xarray 2026.2.0 pyhcf101f3_0 conda-forge
xarray-dataclass 3.0.0 pyhd8ed1ab_1 conda-forge
xarray-datatree 0.0.14 pypi_0 pypi
xarray-spatial 0.9.1 pypi_0 pypi
xcb-util 0.4.1 hca56bd8_2 conda-forge
xcb-util-cursor 0.1.6 he30d5cf_0 conda-forge
xcb-util-image 0.4.0 h5c728e9_2 conda-forge
xcb-util-keysyms 0.4.1 h5c728e9_0 conda-forge
xcb-util-renderutil 0.3.10 h5c728e9_0 conda-forge
xcb-util-wm 0.4.2 h5c728e9_0 conda-forge
xerces-c 3.3.0 h5dc9dfc_1 conda-forge
xgboost 3.1.2 rapidsai_pyh3432f66_1 rapidsai
xkeyboard-config 2.47 he30d5cf_0 conda-forge
xlrd 2.0.2 pyhd8ed1ab_0 conda-forge
xlsxwriter 3.2.9 pyhd8ed1ab_0 conda-forge
xmltodict 1.0.4 pyhcf101f3_0 conda-forge
xorg-libice 1.1.2 h86ecc28_0 conda-forge
xorg-libsm 1.2.6 h0808dbd_0 conda-forge
xorg-libx11 1.8.13 h63a1b12_0 conda-forge
xorg-libxau 1.0.12 he30d5cf_1 conda-forge
xorg-libxcomposite 0.4.7 he30d5cf_0 conda-forge
xorg-libxcursor 1.2.3 h86ecc28_0 conda-forge
xorg-libxdamage 1.1.6 h86ecc28_0 conda-forge
xorg-libxdmcp 1.1.5 he30d5cf_1 conda-forge
xorg-libxext 1.3.7 he30d5cf_0 conda-forge
xorg-libxfixes 6.0.2 he30d5cf_0 conda-forge
xorg-libxi 1.8.2 h57736b2_0 conda-forge
xorg-libxrandr 1.5.5 he30d5cf_0 conda-forge
xorg-libxrender 0.9.12 h86ecc28_0 conda-forge
xorg-libxscrnsaver 1.2.4 h86ecc28_0 conda-forge
xorg-libxshmfence 1.3.3 h86ecc28_0 conda-forge
xorg-libxt 1.3.1 h57736b2_0 conda-forge
xorg-libxtst 1.2.5 h57736b2_3 conda-forge
xorg-libxxf86vm 1.1.7 he30d5cf_0 conda-forge
xorg-xextproto 7.3.0 h57736b2_1004 conda-forge
xsdata 26.2 pypi_0 pypi
xyzservices 2025.11.0 pyhd8ed1ab_0 conda-forge
yaml 0.2.5 h80f16a2_3 conda-forge
yaml-cpp 0.8.0 h5ad3122_0 conda-forge
yarl 1.23.0 py313hd3a54cf_0 conda-forge
yq 3.4.3 pyhe01879c_2 conda-forge
zarr 3.1.5 pyhcf101f3_0 conda-forge
zeromq 4.3.5 hefbcea8_9 conda-forge
zfp 1.0.1 h05c1e92_5 conda-forge
zict 3.0.0 pyhd8ed1ab_1 conda-forge
zipp 3.23.0 pyhcf101f3_1 conda-forge
zlib 1.3.1 h86ecc28_2 conda-forge
zlib-ng 2.3.3 ha7cb516_1 conda-forge
zstandard 0.25.0 py313h62ef0ea_1 conda-forge
zstd 1.5.7 h85ac4a6_6 conda-forge
apt list --installed:
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Listing...
adduser/now 3.137ubuntu1 all [installed,local]
apt/now 2.8.3 arm64 [installed,local]
base-files/now 13ubuntu10.4 arm64 [installed,local]
base-passwd/now 3.6.3build1 arm64 [installed,local]
bash/now 5.2.21-2ubuntu4 arm64 [installed,local]
binutils-aarch64-linux-gnu/now 2.42-4ubuntu2.8 arm64 [installed,local]
binutils-common/now 2.42-4ubuntu2.8 arm64 [installed,local]
binutils/now 2.42-4ubuntu2.8 arm64 [installed,local]
bsdutils/now 1:2.39.3-9ubuntu6.4 arm64 [installed,local]
build-essential/now 12.10ubuntu1 arm64 [installed,local]
bzip2/now 1.0.8-5.1build0.1 arm64 [installed,local]
ca-certificates/now 20240203 all [installed,local]
cm-super-minimal/now 0.3.4-17 all [installed,local]
cm-super/now 0.3.4-17 all [installed,local]
coreutils/now 9.4-3ubuntu6.1 arm64 [installed,local]
cpp-13-aarch64-linux-gnu/now 13.3.0-6ubuntu2~24.04.1 arm64 [installed,local]
cpp-13/now 13.3.0-6ubuntu2~24.04.1 arm64 [installed,local]
cpp-aarch64-linux-gnu/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
cpp/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
curl/now 8.5.0-2ubuntu10.7 arm64 [installed,local]
dash/now 0.5.12-6ubuntu5 arm64 [installed,local]
debconf/now 1.5.86ubuntu1 all [installed,local]
debianutils/now 5.17build1 arm64 [installed,local]
diffutils/now 1:3.10-1build1 arm64 [installed,local]
dpkg-dev/now 1.22.6ubuntu6.5 all [installed,local]
dpkg/now 1.22.6ubuntu6.5 arm64 [installed,local]
dvipng/now 1.15-1.1 arm64 [installed,local]
e2fsprogs/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
ffmpeg/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
findutils/now 4.9.0-5build1 arm64 [installed,local]
fontconfig-config/now 2.15.0-1.1ubuntu2 arm64 [installed,local]
fontconfig/now 2.15.0-1.1ubuntu2 arm64 [installed,local]
fonts-dejavu-core/now 2.37-8 all [installed,local]
fonts-dejavu-extra/now 2.37-8 all [installed,local]
fonts-dejavu-mono/now 2.37-8 all [installed,local]
fonts-dejavu/now 2.37-8 all [installed,local]
fonts-liberation/now 1:2.1.5-3 all [installed,local]
fonts-lmodern/now 2.005-1 all [installed,local]
fonts-urw-base35/now 20200910-8 all [installed,local]
g++-13-aarch64-linux-gnu/now 13.3.0-6ubuntu2~24.04.1 arm64 [installed,local]
g++-13/now 13.3.0-6ubuntu2~24.04.1 arm64 [installed,local]
g++-aarch64-linux-gnu/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
g++/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
gcc-13-aarch64-linux-gnu/now 13.3.0-6ubuntu2~24.04.1 arm64 [installed,local]
gcc-13-base/now 13.3.0-6ubuntu2~24.04.1 arm64 [installed,local]
gcc-13/now 13.3.0-6ubuntu2~24.04.1 arm64 [installed,local]
gcc-14-base/now 14.2.0-4ubuntu2~24.04.1 arm64 [installed,local]
gcc-aarch64-linux-gnu/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
gcc/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
gfortran-13-aarch64-linux-gnu/now 13.3.0-6ubuntu2~24.04.1 arm64 [installed,local]
gfortran-13/now 13.3.0-6ubuntu2~24.04.1 arm64 [installed,local]
gfortran-aarch64-linux-gnu/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
gfortran/now 4:13.2.0-7ubuntu1 arm64 [installed,local]
ghostscript/now 10.02.1~dfsg1-0ubuntu7.8 arm64 [installed,local]
git-lfs/now 3.4.1-1ubuntu0.3 arm64 [installed,local]
git-man/now 1:2.43.0-1ubuntu7.3 all [installed,local]
git/now 1:2.43.0-1ubuntu7.3 arm64 [installed,local]
gpgv/now 2.4.4-2ubuntu17.4 arm64 [installed,local]
grep/now 3.11-4build1 arm64 [installed,local]
gzip/now 1.12-1ubuntu3.1 arm64 [installed,local]
hostname/now 3.23+nmu2ubuntu2 arm64 [installed,local]
init-system-helpers/now 1.66ubuntu1 all [installed,local]
less/now 590-2ubuntu2.1 arm64 [installed,local]
libacl1/now 2.3.2-1build1.1 arm64 [installed,local]
libaom3/now 3.8.2-2ubuntu0.1 arm64 [installed,local]
libapache-pom-java/now 29-2 all [installed,local]
libapparmor1/now 4.0.1really4.0.1-0ubuntu0.24.04.5 arm64 [installed,local]
libapt-pkg6.0t64/now 2.8.3 arm64 [installed,local]
libasan8/now 14.2.0-4ubuntu2~24.04.1 arm64 [installed,local]
libasound2-data/now 1.2.11-1ubuntu0.2 all [installed,local]
libasound2t64/now 1.2.11-1ubuntu0.2 arm64 [installed,local]
libass9/now 1:0.17.1-2build1 arm64 [installed,local]
libassuan0/now 2.5.6-1build1 arm64 [installed,local]
libasyncns0/now 0.8-6build4 arm64 [installed,local]
libatomic1/now 14.2.0-4ubuntu2~24.04.1 arm64 [installed,local]
libattr1/now 1:2.5.2-1build1.1 arm64 [installed,local]
libaudit-common/now 1:3.1.2-2.1build1.1 all [installed,local]
libaudit1/now 1:3.1.2-2.1build1.1 arm64 [installed,local]
libavahi-client3/now 0.8-13ubuntu6.1 arm64 [installed,local]
libavahi-common-data/now 0.8-13ubuntu6.1 arm64 [installed,local]
libavahi-common3/now 0.8-13ubuntu6.1 arm64 [installed,local]
libavc1394-0/now 0.5.4-5build3 arm64 [installed,local]
libavcodec60/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libavdevice60/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libavfilter9/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libavformat60/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libavutil58/now 7:6.1.1-3ubuntu5 arm64 [installed,local]
libbinutils/now 2.42-4ubuntu2.8 arm64 [installed,local]
libblas3/now 3.12.0-3build1.1 arm64 [installed,local]
libblkid1/now 2.39.3-9ubuntu6.4 arm64 [installed,local]
libbluray2/now 1:1.3.4-1build1 arm64 [installed,local]
libbrotli1/now 1.1.0-2build2 arm64 [installed,local]
libbs2b0/now 3.1.0+dfsg-7build1 arm64 [installed,local]
libbsd0/now 0.12.1-1build1.1 arm64 [installed,local]
libbz2-1.0/now 1.0.8-5.1build0.1 arm64 [installed,local]
libc-bin/now 2.39-0ubuntu8.7 arm64 [installed,local]
libc-dev-bin/now 2.39-0ubuntu8.7 arm64 [installed,local]
libc6-dev/now 2.39-0ubuntu8.7 arm64 [installed,local]
libc6/now 2.39-0ubuntu8.7 arm64 [installed,local]
libcaca0/now 0.99.beta20-4ubuntu0.1 arm64 [installed,local]
libcairo-gobject2/now 1.18.0-3build1 arm64 [installed,local]
libcairo2/now 1.18.0-3build1 arm64 [installed,local]
libcap-ng0/now 0.8.4-2build2 arm64 [installed,local]
libcap2/now 1:2.66-5ubuntu2.2 arm64 [installed,local]
libcbor0.10/now 0.10.2-1.2ubuntu2 arm64 [installed,local]
libcc1-0/now 14.2.0-4ubuntu2~24.04.1 arm64 [installed,local]
libcdio-cdda2t64/now 10.2+2.0.1-1.1build2 arm64 [installed,local]
libcdio-paranoia2t64/now 10.2+2.0.1-1.1build2 arm64 [installed,local]
libcdio19t64/now 2.1.0-4.1ubuntu1.2 arm64 [installed,local]
libchromaprint1/now 1.5.1-5 arm64 [installed,local]
libcjson1/now 1.7.17-1 arm64 [installed,local]
libcodec2-1.2/now 1.2.0-2build1 arm64 [installed,local]
libcom-err2/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
libcommons-logging-java/now 1.3.0-1ubuntu1 all [installed,local]
libcommons-parent-java/now 56-1 all [installed,local]
libcrypt-dev/now 1:4.4.36-4build1 arm64 [installed,local]
libcrypt1/now 1:4.4.36-4build1 arm64 [installed,local]
libctf-nobfd0/now 2.42-4ubuntu2.8 arm64 [installed,local]
libctf0/now 2.42-4ubuntu2.8 arm64 [installed,local]
libcups2t64/now 2.4.7-1.2ubuntu7.9 arm64 [installed,local]
libcurl3t64-gnutls/now 8.5.0-2ubuntu10.7 arm64 [installed,local]
libcurl4t64/now 8.5.0-2ubuntu10.7 arm64 [installed,local]
libdatrie1/now 0.2.13-3build1 arm64 [installed,local]
libdav1d7/now 1.4.1-1build1 arm64 [installed,local]
libdb5.3t64/now 5.3.28+dfsg2-7 arm64 [installed,local]
libdbus-1-3/now 1.14.10-4ubuntu4.1 arm64 [installed,local]
libdc1394-25/now 2.2.6-4build1 arm64 [installed,local]
libde265-0/now 1.0.15-1build3 arm64 [installed,local]
libdebconfclient0/now 0.271ubuntu3 arm64 [installed,local]
libdecor-0-0/now 0.2.2-1build2 arm64 [installed,local]
libdeflate0/now 1.19-1build1.1 arm64 [installed,local]
libdpkg-perl/now 1.22.6ubuntu6.5 all [installed,local]
libdrm-amdgpu1/now 2.4.125-1ubuntu0.1~24.04.1 arm64 [installed,local]
libdrm-common/now 2.4.125-1ubuntu0.1~24.04.1 all [installed,local]
libdrm2/now 2.4.125-1ubuntu0.1~24.04.1 arm64 [installed,local]
libedit2/now 3.1-20230828-1build1 arm64 [installed,local]
libelf1t64/now 0.190-1.1ubuntu0.1 arm64 [installed,local]
liberror-perl/now 0.17029-2 all [installed,local]
libexpat1/now 2.6.1-2ubuntu0.4 arm64 [installed,local]
libext2fs2t64/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
libffi8/now 3.4.6-1build1 arm64 [installed,local]
libfftw3-double3/now 3.3.10-1ubuntu3 arm64 [installed,local]
libfido2-1/now 1.14.0-1build3 arm64 [installed,local]
libflac12t64/now 1.4.3+ds-2.1ubuntu2 arm64 [installed,local]
libflite1/now 2.2-6build3 arm64 [installed,local]
libfontbox-java/now 1:1.8.16-5 all [installed,local]
libfontconfig1/now 2.15.0-1.1ubuntu2 arm64 [installed,local]
libfontenc1/now 1:1.1.8-1build1 arm64 [installed,local]
libfreetype6/now 2.13.2+dfsg-1build3 arm64 [installed,local]
libfribidi0/now 1.0.13-3build1 arm64 [installed,local]
libgbm1/now 25.2.8-0ubuntu0.24.04.1 arm64 [installed,local]
libgcc-13-dev/now 13.3.0-6ubuntu2~24.04.1 arm64 [installed,local]
libgcc-s1/now 14.2.0-4ubuntu2~24.04.1 arm64 [installed,local]
libgcrypt20/now 1.10.3-2build1 arm64 [installed,local]
libgd3/now 2.3.3-9ubuntu5 arm64 [installed,local]
libgdbm-compat4t64/now 1.23-5.1build1 arm64 [installed,local]
libgdbm6t64/now 1.23-5.1build1 arm64 [installed,local]
libgdk-pixbuf-2.0-0/now 2.42.10+dfsg-3ubuntu3.2 arm64 [installed,local]
libgdk-pixbuf2.0-common/now 2.42.10+dfsg-3ubuntu3.2 all [installed,local]
libgfortran-13-dev/now 13.3.0-6ubuntu2~24.04.1 arm64 [installed,local]
libgfortran5/now 14.2.0-4ubuntu2~24.04.1 arm64 [installed,local]
libgl1-mesa-dri/now 25.2.8-0ubuntu0.24.04.1 arm64 [installed,local]
libgl1/now 1.7.0-1build1 arm64 [installed,local]
libglib2.0-0t64/now 2.80.0-6ubuntu3.8 arm64 [installed,local]
libglvnd0/now 1.7.0-1build1 arm64 [installed,local]
libglx-mesa0/now 25.2.8-0ubuntu0.24.04.1 arm64 [installed,local]
libglx0/now 1.7.0-1build1 arm64 [installed,local]
libgme0/now 0.6.3-7build1 arm64 [installed,local]
libgmp10/now 2:6.3.0+dfsg-2ubuntu6.1 arm64 [installed,local]
libgnutls30t64/now 3.8.3-1.1ubuntu3.5 arm64 [installed,local]
libgomp1/now 14.2.0-4ubuntu2~24.04.1 arm64 [installed,local]
libgpg-error0/now 1.47-3build2.1 arm64 [installed,local]
libgprofng0/now 2.42-4ubuntu2.8 arm64 [installed,local]
libgraphite2-3/now 1.3.14-2build1 arm64 [installed,local]
libgs-common/now 10.02.1~dfsg1-0ubuntu7.8 all [installed,local]
libgs10-common/now 10.02.1~dfsg1-0ubuntu7.8 all [installed,local]
libgs10/now 10.02.1~dfsg1-0ubuntu7.8 arm64 [installed,local]
libgsm1/now 1.0.22-1build1 arm64 [installed,local]
libgssapi-krb5-2/now 1.20.1-6ubuntu2.6 arm64 [installed,local]
libharfbuzz0b/now 8.3.0-2build2 arm64 [installed,local]
libheif-plugin-aomdec/now 1.17.6-1ubuntu4.2 arm64 [installed,local]
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libzix-0-0/now 0.4.2-2build1 arm64 [installed,local]
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logsave/now 1.47.0-2.4~exp1ubuntu4.1 arm64 [installed,local]
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mawk/now 1.3.4.20240123-1build1 arm64 [installed,local]
media-types/now 10.1.0 all [installed,local]
mesa-libgallium/now 25.2.8-0ubuntu0.24.04.1 arm64 [installed,local]
mount/now 2.39.3-9ubuntu6.4 arm64 [installed,local]
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netbase/now 6.4 all [installed,local]
ocl-icd-libopencl1/now 2.3.2-1build1 arm64 [installed,local]
openssh-client/now 1:9.6p1-3ubuntu13.14 arm64 [installed,local]
openssl/now 3.0.13-0ubuntu3.7 arm64 [installed,local]
pandoc-data/now 3.1.3-1 all [installed,local]
pandoc/now 3.1.3+ds-2 arm64 [installed,local]
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pfb2t1c2pfb/now 0.3-11build1 arm64 [installed,local]
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procps/now 2:4.0.4-4ubuntu3.2 arm64 [installed,local]
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sensible-utils/now 0.0.22 all [installed,local]
shared-mime-info/now 2.4-4 arm64 [installed,local]
sudo/now 1.9.15p5-3ubuntu5.24.04.1 arm64 [installed,local]
sysvinit-utils/now 3.08-6ubuntu3 arm64 [installed,local]
t1utils/now 1.41-4build3 arm64 [installed,local]
tar/now 1.35+dfsg-3build1 arm64 [installed,local]
teckit/now 2.5.12+ds1-1 arm64 [installed,local]
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texlive-pictures/now 2023.20240207-1 all [installed,local]
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tzdata/now 2025b-0ubuntu0.24.04.1 all [installed,local]
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xdg-utils/now 1.1.3-4.1ubuntu3 all [installed,local]
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R --version:
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-conda-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
https://www.gnu.org/licenses/.
R --silent -e 'installed.packages(.Library)[, c(1,3)]':
> installed.packages(.Library)[, c(1,3)]
Package Version
abind "abind" "1.4-8"
anndata "anndata" "0.7.5.6"
AnnotationDbi "AnnotationDbi" "1.68.0"
AnnotationFilter "AnnotationFilter" "1.30.0"
ape "ape" "5.8-1"
aplot "aplot" "0.2.9"
arrow "arrow" "21.0.0"
askpass "askpass" "1.2.1"
assertthat "assertthat" "0.2.1"
assorthead "assorthead" "1.0.0"
backports "backports" "1.5.0"
base "base" "4.4.3"
base64enc "base64enc" "0.1-6"
basilisk "basilisk" "1.18.0"
basilisk.utils "basilisk.utils" "1.18.0"
batchelor "batchelor" "1.22.0"
beachmat "beachmat" "2.22.0"
beeswarm "beeswarm" "0.4.0"
BH "BH" "1.87.0-1"
Biobase "Biobase" "2.66.0"
BiocFileCache "BiocFileCache" "2.14.0"
BiocGenerics "BiocGenerics" "0.52.0"
BiocIO "BiocIO" "1.16.0"
BiocManager "BiocManager" "1.30.27"
BiocNeighbors "BiocNeighbors" "2.0.0"
BiocParallel "BiocParallel" "1.40.0"
BiocSingular "BiocSingular" "1.22.0"
biomaRt "biomaRt" "2.62.0"
Biostrings "Biostrings" "2.74.0"
biovizBase "biovizBase" "1.54.0"
bit "bit" "4.6.0"
bit64 "bit64" "4.6.0-1"
bitops "bitops" "1.0-9"
blob "blob" "1.3.0"
bluster "bluster" "1.16.0"
boot "boot" "1.3-32"
brew "brew" "1.0-10"
brio "brio" "1.1.5"
broom "broom" "1.0.12"
broom.helpers "broom.helpers" "1.22.0"
BSgenome "BSgenome" "1.74.0"
bslib "bslib" "0.10.0"
cachem "cachem" "1.1.0"
Cairo "Cairo" "1.7-0"
callr "callr" "3.7.6"
car "car" "3.1-5"
carData "carData" "3.0-6"
cards "cards" "0.7.1"
caret "caret" "7.0-1"
caTools "caTools" "1.18.3"
CCPlotR "CCPlotR" "1.4.0"
cellranger "cellranger" "1.1.0"
checkmate "checkmate" "2.3.3"
circlize "circlize" "0.4.17"
class "class" "7.3-23"
cli "cli" "3.6.5"
clipr "clipr" "0.8.0"
clock "clock" "0.7.4"
clue "clue" "0.3-67"
cluster "cluster" "2.1.8.2"
clusterProfiler "clusterProfiler" "4.14.0"
clustree "clustree" "0.5.1"
codetools "codetools" "0.2-20"
collections "collections" "0.3.11"
colorspace "colorspace" "2.1-2"
commonmark "commonmark" "2.0.0"
compiler "compiler" "4.4.3"
ComplexHeatmap "ComplexHeatmap" "2.22.0"
conflicted "conflicted" "1.2.0"
conquer "conquer" "1.3.3"
corrplot "corrplot" "0.95"
cowplot "cowplot" "1.2.0"
cpp11 "cpp11" "0.5.3"
crayon "crayon" "1.5.3"
credentials "credentials" "2.0.3"
crosstalk "crosstalk" "1.2.2"
crul "crul" "1.6.0"
curl "curl" "7.0.0"
cyclocomp "cyclocomp" "1.1.1"
data.table "data.table" "1.17.8"
datasets "datasets" "4.4.3"
DBI "DBI" "1.3.0"
dbplyr "dbplyr" "2.5.2"
decoupleR "decoupleR" "2.12.0"
DelayedArray "DelayedArray" "0.32.0"
DelayedMatrixStats "DelayedMatrixStats" "1.28.0"
deldir "deldir" "2.0-4"
Deriv "Deriv" "4.2.0"
desc "desc" "1.4.3"
DESeq2 "DESeq2" "1.46.0"
devtools "devtools" "2.4.6"
diagram "diagram" "1.6.5"
dials "dials" "1.4.2"
DiceDesign "DiceDesign" "1.10"
dichromat "dichromat" "2.0-0.1"
diffobj "diffobj" "0.3.6"
digest "digest" "0.6.39"
dir.expiry "dir.expiry" "1.14.0"
doBy "doBy" "4.7.1"
doParallel "doParallel" "1.0.17"
DOSE "DOSE" "4.0.0"
dotCall64 "dotCall64" "1.2"
downlit "downlit" "0.4.5"
dplyr "dplyr" "1.2.0"
dqrng "dqrng" "0.3.2"
dtplyr "dtplyr" "1.3.3"
e1071 "e1071" "1.7-17"
edgeR "edgeR" "4.4.0"
ellipsis "ellipsis" "0.3.2"
enrichplot "enrichplot" "1.26.1"
ensembldb "ensembldb" "2.30.0"
evaluate "evaluate" "1.0.5"
fansi "fansi" "1.0.7"
farver "farver" "2.1.2"
fastcluster "fastcluster" "1.3.0"
fastDummies "fastDummies" "1.7.5"
fastmap "fastmap" "1.2.0"
fastmatch "fastmatch" "1.1-8"
feather "feather" "0.4.0"
fgsea "fgsea" "1.32.2"
filelock "filelock" "1.0.3"
fitdistrplus "fitdistrplus" "1.2-6"
FNN "FNN" "1.1.4.1"
fontawesome "fontawesome" "0.5.3"
fontBitstreamVera "fontBitstreamVera" "0.1.1"
fontLiberation "fontLiberation" "0.1.0"
fontquiver "fontquiver" "0.2.1"
forcats "forcats" "1.0.1"
foreach "foreach" "1.5.2"
forecast "forecast" "9.0.1"
foreign "foreign" "0.8-91"
formatR "formatR" "1.14"
Formula "Formula" "1.2-5"
fracdiff "fracdiff" "1.5-3"
fs "fs" "1.6.6"
furrr "furrr" "0.3.1"
futile.logger "futile.logger" "1.4.9"
futile.options "futile.options" "1.0.1"
future "future" "1.69.0"
future.apply "future.apply" "1.20.2"
gargle "gargle" "1.6.1"
gbRd "gbRd" "0.4.12"
gdtools "gdtools" "0.5.0"
generics "generics" "0.1.4"
GenomeInfoDb "GenomeInfoDb" "1.42.0"
GenomeInfoDbData "GenomeInfoDbData" "1.2.13"
GenomicAlignments "GenomicAlignments" "1.42.0"
GenomicFeatures "GenomicFeatures" "1.58.0"
GenomicRanges "GenomicRanges" "1.58.0"
gert "gert" "2.3.1"
GetoptLong "GetoptLong" "1.1.0"
gfonts "gfonts" "0.2.0"
GGally "GGally" "2.4.0"
ggbeeswarm "ggbeeswarm" "0.7.3"
ggbump "ggbump" "0.1.0"
ggforce "ggforce" "0.5.0"
ggfun "ggfun" "0.2.0"
ggh4x "ggh4x" "0.3.1"
ggiraph "ggiraph" "0.9.5"
ggnewscale "ggnewscale" "0.5.2"
ggplot2 "ggplot2" "4.0.2"
ggplotify "ggplotify" "0.1.3"
ggpubr "ggpubr" "0.6.3"
ggraph "ggraph" "2.2.2"
ggrastr "ggrastr" "1.0.2"
ggrepel "ggrepel" "0.9.6"
ggridges "ggridges" "0.5.7"
ggsci "ggsci" "4.2.0"
ggsignif "ggsignif" "0.6.4"
ggstats "ggstats" "0.13.0"
ggtangle "ggtangle" "0.1.1"
ggtext "ggtext" "0.1.2"
ggthemes "ggthemes" "5.2.0"
ggtree "ggtree" "3.14.0"
ggupset "ggupset" "0.4.1"
ggvenn "ggvenn" "0.1.19"
gh "gh" "1.5.0"
gitcreds "gitcreds" "0.1.2"
GlobalOptions "GlobalOptions" "0.1.3"
globals "globals" "0.19.0"
glue "glue" "1.8.0"
GO.db "GO.db" "3.20.0"
goftest "goftest" "1.2-3"
googledrive "googledrive" "2.1.2"
googlesheets4 "googlesheets4" "1.1.2"
GOSemSim "GOSemSim" "2.32.0"
gower "gower" "1.0.2"
GPfit "GPfit" "1.0-9"
gplots "gplots" "3.3.0"
graph "graph" "1.84.0"
graphics "graphics" "4.4.3"
graphlayouts "graphlayouts" "1.2.3"
grDevices "grDevices" "4.4.3"
grid "grid" "4.4.3"
gridExtra "gridExtra" "2.3"
gridGraphics "gridGraphics" "0.5-1"
gridtext "gridtext" "0.1.6"
grImport "grImport" "0.9-7"
gson "gson" "0.1.0"
gtable "gtable" "0.3.6"
gtools "gtools" "3.9.5"
Gviz "Gviz" "1.50.0"
hardhat "hardhat" "1.4.2"
harmony "harmony" "1.2.4"
haven "haven" "2.5.5"
HDF5Array "HDF5Array" "1.34.0"
here "here" "1.0.2"
hexbin "hexbin" "1.28.5"
highr "highr" "0.12"
Hmisc "Hmisc" "5.2-5"
hms "hms" "1.1.4"
htmlTable "htmlTable" "2.4.3"
htmltools "htmltools" "0.5.9"
htmlwidgets "htmlwidgets" "1.6.4"
httpcode "httpcode" "0.3.0"
httpuv "httpuv" "1.6.16"
httr "httr" "1.4.8"
httr2 "httr2" "1.2.2"
ica "ica" "1.0-3"
ids "ids" "1.0.1"
igraph "igraph" "2.1.4"
infer "infer" "1.1.0"
ini "ini" "0.3.1"
InteractionSet "InteractionSet" "1.34.0"
interp "interp" "1.1-6"
ipred "ipred" "0.9-15"
IRanges "IRanges" "2.40.0"
IRdisplay "IRdisplay" "1.1"
IRkernel "IRkernel" "1.3.2"
irlba "irlba" "2.3.7"
isoband "isoband" "0.3.0"
iterators "iterators" "1.0.14"
janitor "janitor" "2.2.1"
jpeg "jpeg" "0.1-11"
jquerylib "jquerylib" "0.1.4"
jsonlite "jsonlite" "2.0.0"
KEGGREST "KEGGREST" "1.46.0"
kernlab "kernlab" "0.9-33"
KernSmooth "KernSmooth" "2.23-26"
knitr "knitr" "1.51"
ks "ks" "1.15.1"
labeling "labeling" "0.4.3"
labelled "labelled" "2.16.0"
lambda.r "lambda.r" "1.2.4"
languageserver "languageserver" "0.3.17"
later "later" "1.4.8"
lattice "lattice" "0.22-9"
latticeExtra "latticeExtra" "0.6-31"
lava "lava" "1.8.2"
lazyeval "lazyeval" "0.2.2"
leidenbase "leidenbase" "0.1.36"
lhs "lhs" "1.2.1"
lifecycle "lifecycle" "1.0.5"
limma "limma" "3.62.1"
lintr "lintr" "3.3.0-1"
listenv "listenv" "0.10.1"
litedown "litedown" "0.9"
lme4 "lme4" "1.1-38"
lmtest "lmtest" "0.9-40"
locfit "locfit" "1.5-9.12"
LoomExperiment "LoomExperiment" "1.24.0"
lubridate "lubridate" "1.9.5"
magrittr "magrittr" "2.0.4"
markdown "markdown" "2.0"
MASS "MASS" "7.3-65"
MAST "MAST" "1.32.0"
Matrix "Matrix" "1.7-4"
MatrixGenerics "MatrixGenerics" "1.18.0"
MatrixModels "MatrixModels" "0.5-4"
matrixStats "matrixStats" "1.5.0"
mclust "mclust" "6.1.2"
memoise "memoise" "2.0.1"
metapod "metapod" "1.14.0"
methods "methods" "4.4.3"
mgcv "mgcv" "1.9-4"
microbenchmark "microbenchmark" "1.5.0"
mime "mime" "0.13"
miniUI "miniUI" "0.1.2"
minqa "minqa" "1.2.8"
misc3d "misc3d" "0.9-2"
modeldata "modeldata" "1.5.1"
modelenv "modelenv" "0.2.0"
ModelMetrics "ModelMetrics" "1.2.2.2"
modelr "modelr" "0.1.11"
multicool "multicool" "1.0.1"
munsell "munsell" "0.5.1"
mvtnorm "mvtnorm" "1.3-3"
Nebulosa "Nebulosa" "1.16.0"
nlme "nlme" "3.1-168"
nloptr "nloptr" "2.2.1"
nnet "nnet" "7.3-20"
numDeriv "numDeriv" "2016.8-1.1"
nycflights13 "nycflights13" "1.0.2"
openssl "openssl" "2.3.5"
openxlsx "openxlsx" "4.2.8.1"
org.Hs.eg.db "org.Hs.eg.db" "3.20.0"
org.Mm.eg.db "org.Mm.eg.db" "3.20.0"
otel "otel" "0.2.0"
paletteer "paletteer" "1.7.0"
parallel "parallel" "4.4.3"
parallelDist "parallelDist" "0.2.7"
parallelly "parallelly" "1.46.1"
parsnip "parsnip" "1.4.1"
patchwork "patchwork" "1.3.2"
pbapply "pbapply" "1.7-4"
pbdZMQ "pbdZMQ" "0.3-14"
pbkrtest "pbkrtest" "0.5.5"
pheatmap "pheatmap" "1.0.13"
pillar "pillar" "1.11.1"
pkgbuild "pkgbuild" "1.4.8"
pkgconfig "pkgconfig" "2.0.3"
pkgdown "pkgdown" "2.2.0"
pkgload "pkgload" "1.5.0"
plogr "plogr" "0.2.0"
plot3D "plot3D" "1.4.2"
plotly "plotly" "4.12.0"
plyr "plyr" "1.8.9"
png "png" "0.1-8"
polyclip "polyclip" "1.10-7"
polynom "polynom" "1.4-1"
pracma "pracma" "2.4.6"
praise "praise" "1.0.0"
presto "presto" "1.0.0"
prettyunits "prettyunits" "1.2.0"
prismatic "prismatic" "1.1.2"
pROC "pROC" "1.19.0.1"
processx "processx" "3.8.6"
prodlim "prodlim" "2025.04.28"
profvis "profvis" "0.4.0"
progress "progress" "1.2.3"
progressr "progressr" "0.18.0"
promises "promises" "1.5.0"
ProtGenerics "ProtGenerics" "1.38.0"
proxy "proxy" "0.4-29"
ps "ps" "1.9.1"
purrr "purrr" "1.2.1"
quadprog "quadprog" "1.5-8"
quantmod "quantmod" "0.4.28"
quantreg "quantreg" "6.1"
qvalue "qvalue" "2.38.0"
R.cache "R.cache" "0.17.0"
R.methodsS3 "R.methodsS3" "1.8.2"
R.oo "R.oo" "1.27.1"
R.utils "R.utils" "2.13.0"
R6 "R6" "2.6.1"
ragg "ragg" "1.5.1"
randomForest "randomForest" "4.7-1.2"
RANN "RANN" "2.6.2"
rappdirs "rappdirs" "0.3.4"
rbibutils "rbibutils" "2.4.1"
rcmdcheck "rcmdcheck" "1.4.0"
RColorBrewer "RColorBrewer" "1.1-3"
Rcpp "Rcpp" "1.1.1"
RcppAnnoy "RcppAnnoy" "0.0.23"
RcppArmadillo "RcppArmadillo" "15.2.3-1"
RcppEigen "RcppEigen" "0.3.4.0.2"
RcppHNSW "RcppHNSW" "0.6.0"
RcppML "RcppML" "0.3.7"
RcppParallel "RcppParallel" "5.1.11-2"
RcppProgress "RcppProgress" "0.4.2"
RcppTOML "RcppTOML" "0.2.3"
RCurl "RCurl" "1.98-1.17"
Rdpack "Rdpack" "2.6.6"
readr "readr" "2.2.0"
readxl "readxl" "1.4.5"
recipes "recipes" "1.3.1"
reformulas "reformulas" "0.4.4"
rematch "rematch" "2.0.0"
rematch2 "rematch2" "2.1.2"
remotes "remotes" "2.5.0"
repr "repr" "1.1.7"
reprex "reprex" "2.1.1"
reshape2 "reshape2" "1.4.5"
ResidualMatrix "ResidualMatrix" "1.16.0"
restfulr "restfulr" "0.0.16"
reticulate "reticulate" "1.45.0"
rex "rex" "1.2.1"
Rgraphviz "Rgraphviz" "2.50.0"
rhdf5 "rhdf5" "2.50.0"
rhdf5filters "rhdf5filters" "1.18.0"
Rhdf5lib "Rhdf5lib" "1.28.0"
RhpcBLASctl "RhpcBLASctl" "0.23-42"
Rhtslib "Rhtslib" "3.2.0"
rjson "rjson" "0.2.23"
rlang "rlang" "1.1.7"
rmarkdown "rmarkdown" "2.30"
ROCR "ROCR" "1.0-12"
RODBC "RODBC" "1.3-26.1"
roxygen2 "roxygen2" "7.3.3"
rpart "rpart" "4.1.24"
rprojroot "rprojroot" "2.1.1"
rsample "rsample" "1.3.2"
Rsamtools "Rsamtools" "2.22.0"
RSpectra "RSpectra" "0.16-2"
RSQLite "RSQLite" "2.4.6"
rstatix "rstatix" "0.7.3"
rstudioapi "rstudioapi" "0.18.0"
rsvd "rsvd" "1.0.5"
rtracklayer "rtracklayer" "1.66.0"
Rtsne "Rtsne" "0.17"
rversions "rversions" "3.0.0"
rvest "rvest" "1.0.5"
S4Arrays "S4Arrays" "1.6.0"
S4Vectors "S4Vectors" "0.44.0"
S7 "S7" "0.2.1"
sass "sass" "0.4.10"
ScaledMatrix "ScaledMatrix" "1.14.0"
scales "scales" "1.4.0"
scater "scater" "1.34.1"
scattermore "scattermore" "1.2"
scatterpie "scatterpie" "0.2.6"
scran "scran" "1.34.0"
sctransform "sctransform" "0.4.3"
scuttle "scuttle" "1.16.0"
selectr "selectr" "0.5-1"
sessioninfo "sessioninfo" "1.2.3"
Seurat "Seurat" "5.4.0"
SeuratObject "SeuratObject" "5.3.0"
sfd "sfd" "0.1.0"
shadowtext "shadowtext" "0.1.6"
shape "shape" "1.4.6.1"
shiny "shiny" "1.13.0"
SingleCellExperiment "SingleCellExperiment" "1.28.0"
sitmo "sitmo" "2.0.2"
slam "slam" "0.1-55"
slider "slider" "0.3.3"
snakecase "snakecase" "0.11.1"
snow "snow" "0.4-4"
sourcetools "sourcetools" "0.1.7-1"
sp "sp" "2.2-1"
spam "spam" "2.11-3"
SparseArray "SparseArray" "1.6.0"
SparseM "SparseM" "1.84-2"
sparseMatrixStats "sparseMatrixStats" "1.18.0"
sparsevctrs "sparsevctrs" "0.3.5"
spatstat.data "spatstat.data" "3.1-9"
spatstat.explore "spatstat.explore" "3.7-0"
spatstat.geom "spatstat.geom" "3.7-0"
spatstat.random "spatstat.random" "3.4-4"
spatstat.sparse "spatstat.sparse" "3.1-0"
spatstat.univar "spatstat.univar" "3.1-6"
spatstat.utils "spatstat.utils" "3.2-1"
splines "splines" "4.4.3"
SQUAREM "SQUAREM" "2021.1"
statmod "statmod" "1.5.1"
stats "stats" "4.4.3"
stats4 "stats4" "4.4.3"
strawr "strawr" "0.0.92"
stringi "stringi" "1.8.7"
stringr "stringr" "1.6.0"
styler "styler" "1.11.0"
SummarizedExperiment "SummarizedExperiment" "1.36.0"
survival "survival" "3.8-6"
svglite "svglite" "2.2.2"
sys "sys" "3.4.3"
systemfonts "systemfonts" "1.3.2"
tailor "tailor" "0.1.0"
tcltk "tcltk" "4.4.3"
tensor "tensor" "1.5.1"
testthat "testthat" "3.3.2"
textshape "textshape" "1.7.5"
textshaping "textshaping" "1.0.5"
tibble "tibble" "3.3.1"
tidygraph "tidygraph" "1.3.0"
tidymodels "tidymodels" "1.4.1"
tidyr "tidyr" "1.3.2"
tidyselect "tidyselect" "1.2.1"
tidytree "tidytree" "0.4.7"
tidyverse "tidyverse" "2.0.0"
timechange "timechange" "0.4.0"
timeDate "timeDate" "4052.112"
tinytex "tinytex" "0.58"
tools "tools" "4.4.3"
topGO "topGO" "2.58.0"
trackViewer "trackViewer" "1.42.0"
treeio "treeio" "1.30.0"
triebeard "triebeard" "0.4.1"
tseries "tseries" "0.10-60"
TTR "TTR" "0.24.4"
tune "tune" "2.0.1"
tweenr "tweenr" "2.0.3"
txdbmaker "txdbmaker" "1.2.0"
tzdb "tzdb" "0.5.0"
UCSC.utils "UCSC.utils" "1.2.0"
urca "urca" "1.3-4"
urlchecker "urlchecker" "1.0.1"
urltools "urltools" "1.7.3.1"
usethis "usethis" "3.2.1"
utf8 "utf8" "1.2.6"
utils "utils" "4.4.3"
uuid "uuid" "1.2-2"
uwot "uwot" "0.2.4"
VariantAnnotation "VariantAnnotation" "1.52.0"
vctrs "vctrs" "0.7.1"
vipor "vipor" "0.4.7"
viridis "viridis" "0.6.5"
viridisLite "viridisLite" "0.4.3"
vroom "vroom" "1.6.7"
waldo "waldo" "0.6.2"
warp "warp" "0.2.3"
wesanderson "wesanderson" "0.3.7"
whisker "whisker" "0.4.1"
withr "withr" "3.0.2"
workflows "workflows" "1.3.0"
workflowsets "workflowsets" "1.1.1"
writexl "writexl" "1.5.4"
xfun "xfun" "0.56"
XML "XML" "3.99-0.22"
xml2 "xml2" "1.5.2"
xmlparsedata "xmlparsedata" "1.0.5"
xopen "xopen" "1.0.1"
xtable "xtable" "1.8-8"
xts "xts" "0.14.2"
XVector "XVector" "0.46.0"
yaml "yaml" "2.3.12"
yardstick "yardstick" "1.3.2"
yulab.utils "yulab.utils" "0.2.4"
zellkonverter "zellkonverter" "1.16.0"
zip "zip" "2.3.3"
zlibbioc "zlibbioc" "1.52.0"
zoo "zoo" "1.8-14"
>
>
julia -E 'using InteractiveUtils; versioninfo()':
Julia Version 1.12.5
Commit 5fe89b8ddc1 (2026-02-09 16:05 UTC)
Build Info:
Official https://julialang.org release
Platform Info:
OS: Linux (aarch64-linux-gnu)
CPU: 4 × unknown
WORD_SIZE: 64
LLVM: libLLVM-18.1.7 (ORCJIT, neoverse-n2)
GC: Built with stock GC
Threads: 1 default, 1 interactive, 1 GC (on 4 virtual cores)
Environment:
JULIA_DEPOT_PATH = /opt/julia
JULIA_PKGDIR = /opt/julia
LD_LIBRARY_PATH = :/usr/local/nvidia/lib64
nothing
julia -E 'import Pkg; Pkg.status()':
Status `/opt/julia/environments/v1.12/Project.toml`
[f67ccb44] HDF5 v0.17.2
[7073ff75] IJulia v1.34.4
[c3e4b0f8] Pluto v0.20.23
nothing