Ensemble Clustering combined with Clustering Optimization - hisl6802/ClusteringToolbox GitHub Wiki

Generating an ensemble clustering combined with clustering optimization solution

The pinnacle of this user interface is the ensemble clustering combined with clustering optimization functionality. This functionality allows users to rapidly generation a novel ensemble clustering with clustering optimization for agglomerative hierarchical clustering methods without needing to program a single line.

Ensemble Clustering Specification File

Distance	Linkage	Optimizer	Correlation
CNS	ward	CH	spearman
CS	ward	CH	spearman
CNS	average	SIL	spearman
CS	average	SIL	spearman
CNS	complete	DBI	spearman
CS	complete	DBI	spearman
PW	average	SIL	euclidean

Input file

mz	S1	S2	S3	S4	S5	S6	S7	rtmed
	G1	G1	G1	G1	G2	G2	G2
60.04	$I_{11}$	$I_{12}$	$I_{13}$	$I_{14}$	$I_{15}$	$I_{16}$	$I_{17}$	3.21
61.04	$I_{21}$	$I_{22}$	$I_{23}$	$I_{24}$	$I_{25}$	$I_{26}$	$I_{27}$	3.62
62.04	$I_{31}$	$I_{32}$	$I_{33}$	$I_{34}$	$I_{35}$	$I_{36}$	$I_{37}$	3.62
69.99	$I_{41}$	$I_{42}$	$I_{43}$	$I_{44}$	$I_{45}$	$I_{46}$	$I_{47}$	9.33

Output files

Five separate files comparing clustering solutions, providing visual of co-occurrence clustering, and clustering on the original data.