Source Data Catalog - gpcnetwork/grouse-cms GitHub Wiki

Main CDM Database

The main source GROUSE database may be presented to you in slightly different way depending on your final approved role, described as below:

Source Database Name Dataset Type Role Accessible Notes
GROUSE_DEID_DB full dataset GROUSE_ROLE_C_ANALYTICS NOT Allow Writing in the Same Database
GROUSE_DEID_ANALYTICS_DB_DROCxxx study-specific dataset GROUSE_ROLE_C_ANALYTICS_DROCxxx Allow Writing in the Same Database

Schema - CMS_PCORNET_CDM

Secure views of PCORnet CDM derived from CMS RIF files and other relevant public files (e.g., ACS tables)

CDM View Beneficiary# Encounter# Observation# Other-Identifier#
V_DEID_ADDRESS_GEOCODE NA NA 5,461,243 5,460,901(addressid); 163,511(geocodeid)
V_DEID_ADDRESS_HISTORY 13,734,584 NA 52,616,257 5,453,172(addressid)
V_DEID_DEATH 2,653,304 NA 2,653,304
V_DEID_DEMOGRAPHIC 13,735,779 NA 13,735,779
V_DEID_DIAGNOSIS 11,720,102 766,434,347 4,172,206,936 1,131,501(providerid)
V_DEID_DISPENSING 9,786,772 NA 1,654,128,154 1,244,219(prescriberid)
V_DEID_ENCOUNTER 11,754,850 792,539,447 794,929,636 1,138,901(providerid)
V_DEID_ENROLLMENT 13,667,433 NA 38,435,909
V_DEID_PROCEDURES 11,646,026 796,462,370 4,975,926,639 1,166,530(providerid)
V_DEID_OBS_COMM NA NA 2,929,412 218,564(obscomm_geocodeid)

Schema - PCORNET_CDM_<XX>

Secure views of PCORnet CDM derived from GPC sites' electronic medical records. <XX> represents site's abbreviation (ALLINA, IHC, KUMC, MCRI, MCW, MU, UIOWA, UNMC, UTHSC (UTHOUSTON), UTHSCSA, UTSW, UU, WASHU) and following table provides an overview of CDM table availabilities for each site.

CDM View* ALLINA IHC KUMC MCRI MCW MU UIOWA UNMC UTHSC UTHSCSA UTSW UU WASHU
V_DEID_CONDITION C C C C C C C C C C C C C
V_DEID_DEATH P P P P P P P P P P P P P
V_DEID_DEATH_CAUSE N N N N N N N N N N N N N
V_DEID_DEMOGRAPHIC C C C C C C C C C C C C C
V_DEID_DIAGNOSIS C C C C C C C C C C C C C
V_DEID_DISPENSING C C C C C C C C C C C C C
V_DEID_ENCOUNTER C C C C C C C C C C C C C
V_DEID_ENROLLMENT C C C C C C C C C C C C C
V_DEID_IMMUNIZATION N N N N N N N N N N N N N
V_DEID_LAB_HISTORY N N N N N N N N N N N N N
V_DEID_LAB_RESULT_CM C C C C C C C C C C C C C
V_DEID_MED_ADMIN C C C C C C C C C C C C C
V_DEID_OBS_CLIN C C C C C C C C C C C C C
V_DEID_OBS_GEN N N N N N N N N N N N N N
V_DEID_PCORNET_TRIAL P P P P P P P P P P P P P
V_DEID_PRESCRIBING C C C C C C C C C C C C C
V_DEID_PROCEDURES C C C C C C C C C C C C C
V_DEID_PRO_CM N N N N N N N P N N N N N
V_DEID_VITAL C C C C C C C C C C C C C
  • C: consistently populated
  • P: partially populated
  • N: not populated/empty

Auxciliary Databases

Database Schema Object Name Description
NPPES_NPI_REGISTRY NPPES_FEB BASE TABLE NPIDATA Main NPPES database
NPPES_NPI_REGISTRY NPPES_FEB BASE TABLE NPI_ENDPOINTS
NPPES_NPI_REGISTRY NPPES_FEB BASE TABLE NPI_OTHER_NAMES Other names for NPI
NPPES_NPI_REGISTRY NPPES_FEB BASE TABLE NPI_PRACTICE_LOCATION More Detailed information on Practive Location
NPPES_NPI_REGISTRY NPPES_FEB BASE TABLE NPI_TAXONOMY NPPES Taxonomy Descriptions
ONTOLOGY ACT_ONTOLOGY BASE TABLE * All ACT ontology tables
ONTOLOGY GROUPER_VALUESETS BASE TABLE * Multiple valuesets extracted from public resources
ONTOLOGY LOINC BASE TABLE * LOINC data dictionary
ONTOLOGY RXNORM BASE TABLE * RXNORM data dictionary
ONTOLOGY UMLS_STAGE BASE TABLE * UMLS Metathesaurus
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