Lab PyMOL visualization settings - glasgowlab/home GitHub Wiki

Anum's standard settings

#Basic display settings

bg white
space cmyk
set cartoon_loop_radius, .4

#Lighting and material settings

set light_count, 8
set spec_count, 1
set spec_power, 1
set shininess, 1
set specular, .25
set ambient, 0
set direct, 0
set reflect, 1.5
unset depth_cue

#Ray tracing settings

set ray_shadow_decay_factor, 0.1
set ray_shadow_decay_range, 2
set ray_shadow, off
set ray_texture, 1
set ray_interior_texture, 1;
set ray_trace_mode, 1

Chenlin's publication-quality figure settings

#Basic display settings

set cartoon_loop_radius, 0.4
set cartoon_sampling, 10
set cartoon_transparency, 0
set line_width, 3

#Ray tracing settings

set ray_trace_mode, 1
set ray_shadows, 0
set ray_trace_gain, 0.1
set ray_trace_disco_factor, 1
set ray_trace_color, black

#Lighting and material settings

set antialias, 2
set specular, 0
set power, 0.2
set ambient, 0.4
set direct, 0.45
set valence, 0