Sequence Data - giffordlabcvr/Parvovirus-GLUE GitHub Wiki

In the core project, a single 'master' reference sequence has been defined to represent each parvoviral genus recognized by the ICTV.

Tabular data summarising these reference sequences can be found here.

We explicitly defined the locations of genome features on master reference sequences (see here).

Subfamily Parvovirinae Master Reference Sequences

Protoparvovirus: Carnivore protoparvovirus 1 (NC_001539)
Aveparvovirus: Chicken parvovirus (NC_024452)
Amdoparvovirus: Carnivore amdoparvovirus 1 (NC_001662)
Erythroparvovirus: Human parvovirus B19 (NC_000883)
Dependoparvovirus: Adeno-associated virus 2 (NC_001401)
Copiparvovirus: Bovine parvovirus 2 (NC_006259) Bovine parvovirus 2
Bocaparvovirus: Bovine parvovirus (NC_001540)
Tetraparvovirus: Human parvovirus 4 (NC_007018)
Artiparvovirus: Artibeus jamaicensis parvovirus 1 (NC_016752)

Subfamily Hamaparvovirinae Master Reference Sequences

Chaphamaparvovirus: Porcine parvovirus 7 (NC_040562)
Ichthamaparvovirus: Syngnathus scovelli chapparvovirus (MN049932)
Brevidensoparvovirus: Aedes albopictus densovirus 2 (NC_004285)
Penstyldensoparvovirus: Infectious hypodermal and hematopoietic necrosis virus (NC_002190)

Subfamily Densoparvovirinae Master Reference Sequences

Ambidensovirus: Junonia coenia densovirus (NC_004284)
Aquambidensovirus: Asteroid aquambidensovirus 1 (NC_038532)
Blattambidensovirus: Blattodean blattambidensovirus 1 (NC_005041)
Diciambidensovirus: Hemipteran diciambidensovirus 1 (NC_030296)
Hemiambidensovirus: Dysaphis plantaginea densovirus (NC_034532)
Iteradensoparvovirus: Lepidopteran iteradensovirus 1 (NC_003346)
Miniambidensovirus: Orthopteran miniambidensovirus 1 (NC_022564)
Muscambidensovirus: Haematobia irritans densovirus (MK643151)
Pefuambidensovirus: Blattodean pefuambidensovirus 1 (NC_000936)
Protoambidensovirus: Dipteran protoambidensovirus 1 (MK722617)
Scindoambidensovirus: Hemipteran scindoambidensovirus 1 (NC_004289)