tools_vcf_readcount_annotator.cwl - genome/analysis-workflows GitHub Wiki
Documentation for vcf_readcount_annotator.cwl
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Overview
add bam_readcount info to vcf
Docker Requirement
griffithlab/vatools:4.1.0
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| vcf | File | |||
| bam_readcount_tsv | File | |||
| data_type | [{'type': 'enum', 'symbols': ['DNA', 'RNA']}] | |||
| variant_type | ['null', {'type': 'enum', 'symbols': ['snv', 'indel', 'all']}] | |||
| sample_name | string? |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| annotated_bam_readcount_vcf | File |