tools_varscan_process_somatic.cwl - genome/analysis-workflows GitHub Wiki
Documentation for varscan_process_somatic.cwl
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Overview
varscan v2.4.2 processSomatic
Docker Requirement
mgibio/cle:v1.3.1
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| variants | File | |||
| max_normal_freq | float? |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| somatic_hc | File | |||
| somatic | File | |||
| germline_hc | File | |||
| germline | File | |||
| loh_hc | File | |||
| loh | File |