tools_variants_to_table.cwl - genome/analysis-workflows GitHub Wiki
Documentation for variants_to_table.cwl
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Overview
SelectVariants (GATK 4.1.8.1)
Docker Requirement
broadinstitute/gatk:4.1.8.1
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| reference | ['string', 'File'] | ['.fai', '^.dict'] | ||
| vcf | File | ['.tbi'] | ||
| fields | {'type': 'array', 'items': 'string', 'inputBinding': {'prefix': '-F'}} | |||
| genotype_fields | {'type': 'array', 'items': 'string', 'inputBinding': {'prefix': '-GF'}} |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| variants_tsv | File |