tools_stringtie.cwl - genome/analysis-workflows GitHub Wiki
Documentation for stringtie.cwl
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Overview
StringTie
Docker Requirement
quay.io/biocontainers/stringtie:2.1.4--h7e0af3c_0
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| strand | ['null', {'type': 'enum', 'symbols': ['first', 'second', 'unstranded']}] | |||
| reference_annotation | File | |||
| sample_name | string | |||
| bam | File |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| transcript_gtf | File | |||
| gene_expression_tsv | File |