tools_star_fusion_detect.cwl - genome/analysis-workflows GitHub Wiki
Documentation for star_fusion_detect.cwl
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Overview
STAR-Fusion identify candidate fusion transcript
Docker Requirement
trinityctat/starfusion:1.10.1
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| star_fusion_genome_dir | fusion genome dir directory containing genome lib (see http://STAR-Fusion.github.io) | ['string', 'Directory'] | ||
| junction_file | File | |||
| fusion_output_dir | string | |||
| star_path | string | |||
| examine_coding_effect | boolean? | |||
| fusioninspector_mode | ['null', {'type': 'enum', 'symbols': ['inspect', 'validate']}] | |||
| fastq | File[] | |||
| fastq2 | File[] |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| fusion_predictions | File | |||
| fusion_abridged | File | |||
| coding_region_effects | File? | |||
| fusioninspector_evidence | File[]? |