tools_sompy.cwl - genome/analysis-workflows GitHub Wiki
Documentation for sompy.cwl
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Overview
som.py compares variants in vcf by location and alleles (using bcftools isec).
Docker Requirement
pkrusche/hap.py:v0.3.9
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| truth_vcf | File | |||
| query_vcf | File | |||
| reference | ['string', 'File'] | ['.fai', '^.dict'] | ||
| roi_bed | region of interest bed file to restrict | File |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| sompy_out | stdout |