tools_sequence_to_fastq.cwl - genome/analysis-workflows GitHub Wiki
Documentation for sequence_to_fastq.cwl
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Overview
Picard: BAM to FASTQ
Docker Requirement
broadinstitute/picard:2.23.6
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bam | File? | |||
| fastq1 | File? | |||
| fastq2 | File? | |||
| unzip_fastqs | If true, and the input sequence contains gzipped fastqs, they will be unzipped | boolean? |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| fastq1 | File | |||
| fastq2 | File |