tools_samtools_flagstat.cwl - genome/analysis-workflows GitHub Wiki
Documentation for samtools_flagstat.cwl
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Overview
samtools flagstat
Docker Requirement
quay.io/biocontainers/samtools:1.11--h6270b1f_0
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bam | File | ['^.bai'] |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| flagstats | stdout |