tools_realign.cwl - genome/analysis-workflows GitHub Wiki
Documentation for realign.cwl
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Overview
umi realignment
Docker Requirement
mgibio/dna-alignment:1.0.0
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bam | File | |||
| reference | ['string', 'File'] | ['.amb', '.ann', '.bwt', '.pac', '.sa'] |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| consensus_aligned_bam | File | ['^.bai'] |