tools_read_backed_phasing.cwl - genome/analysis-workflows GitHub Wiki
Documentation for read_backed_phasing.cwl
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Overview
Read-backed phasing
Docker Requirement
mgibio/gatk-cwl:3.6.0
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| reference | ['string', 'File'] | ['.fai', '^.dict'] | ||
| bam | File | ${if (self.nameext === ".bam") {return self.basename + ".bai"} else {return self.basename + ".crai"}} | ||
| vcf | File | ['.tbi'] |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| phased_vcf | File |