Documentation for pvacvector.cwl

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Overview

run pVACvector

Docker Requirement

griffithlab/pvactools:3.1.1

Inputs

Name	Label	Description	Type	Secondary Files
input_file			File
sample_name			string
alleles			string[]
prediction_algorithms			string[]
epitope_lengths_class_i			int[]?
epitope_lengths_class_ii			int[]?
binding_threshold			int?
percentile_threshold			int?
top_score_metric			['null', {'type': 'enum', 'symbols': ['lowest', 'median']}]
iedb_retries			int?
keep_tmp_files			boolean?
input_vcf			File?
input_n_mer			int?
n_threads			int?
spacers			string?
max_clip_length			int?

Outputs

Name	Label	Description	Type	Secondary Files
vector_fasta			File
vector_dna_fasta			File
vector_jpg			File?