Documentation for pizzly.cwl

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Overview

pizzly gene fusion detector

Docker Requirement

mgibio/pizzly-cwl:0.37.3

Inputs

Name	Label	Description	Type	Secondary Files
kallisto_kmer_size		k-mer size used when generating the kallisto index	int?
transcriptome_annotations		reference transcriptome annotations in GTF format	File
reference_transcriptome		reference transcriptome in FASTA format	File
fusion_evidence		fusion evidence generated by kallisto	File

Outputs

Name	Label	Description	Type	Secondary Files
unfiltered_fusion_seqs			File
unfiltered_fusions_json			File
filtered_fusion_seqs			File
filtered_fusions_json			File