tools_mutect.cwl - genome/analysis-workflows GitHub Wiki
Documentation for mutect.cwl
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Overview
Mutect2 (GATK 4)
Docker Requirement
broadinstitute/gatk:4.2.3.0
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| reference | ['string', 'File'] | ['.fai', '^.dict'] | ||
| tumor_bam | File | ['.bai'] | ||
| normal_bam | File? | ['.bai'] | ||
| interval_list | File |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| vcf | File | ['.tbi'] |