tools_intersect_known_variants.cwl - genome/analysis-workflows GitHub Wiki
Documentation for intersect_known_variants.cwl
This page is auto-generated. Do not edit.
Overview
Intersect passing validated variants and passing pipeline variants for use in pvacseq
Docker Requirement
mgibio/bcftools-cwl:1.12
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| vcf | Pipeline variants to be intersected with validated variants, if the vcf is present | File | ['.tbi'] | |
| validated_variants | A vcf of previously discovered variants; if not provided, this tool does nothing but rename the input vcf | File? | ['.tbi'] |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| validated_and_pipeline_vcf | File | ['.tbi'] |