tools_hla_consensus.cwl - genome/analysis-workflows GitHub Wiki
Documentation for hla_consensus.cwl
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Overview
Script to create consensus from optitype and clinical HLA typing
Docker Requirement
python:3.7.4-slim-buster
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| hla_source_mode | {'type': 'enum', 'symbols': ['consensus', 'clinical_only']} | |||
| optitype_hla_alleles | string[] | |||
| clinical_mhc_classI_alleles | string[]? | |||
| clinical_mhc_classII_alleles | string[]? |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| consensus_alleles | string[] | |||
| hla_call_files | Directory |