tools_generate_qc_metrics.cwl - genome/analysis-workflows GitHub Wiki
Documentation for generate_qc_metrics.cwl
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Overview
Picard: RNA Seq Metrics
Docker Requirement
mgibio/rnaseq:1.0.0
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| refFlat | File | |||
| ribosomal_intervals | File? | |||
| strand | ['null', {'type': 'enum', 'symbols': ['first', 'second', 'unstranded']}] | |||
| bam | File |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| metrics | File | |||
| chart | File? |