Documentation for gatk_genotypegvcfs.cwl

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Overview

GATK GenotypeGVCFs

Docker Requirement

broadinstitute/gatk:4.1.8.1

Inputs

Name	Label	Description	Type	Secondary Files
reference			['string', 'File']	['.fai', '^.dict']
gvcfs			{'type': 'array', 'items': 'File', 'inputBinding': {'prefix': '--variant'}}
dbsnp_vcf			File?	['.tbi']
intervals			['null', {'type': 'array', 'items': 'string', 'inputBinding': {'prefix': '-L'}}]

Outputs

Name	Label	Description	Type	Secondary Files
genotype_vcf			File	['.tbi']