Documentation for eval_cle_gold.cwl

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Overview

Make CLE gold evaluation output and vaf report

Docker Requirement

ubuntu:bionic

Inputs

Name	Label	Description	Type	Secondary Files
sompy_out			File
true_negative_bed			File
tn_x_query_snv			File
tn_x_query_indel			File
combined_vcf			File
normal_snv_bam_readcount_tsv			File
normal_indel_bam_readcount_tsv			File
tumor_snv_bam_readcount_tsv			File
tumor_indel_bam_readcount_tsv			File

Outputs

Name	Label	Description	Type	Secondary Files
eval_out			File
vaf_report			File