Documentation for collect_hs_metrics.cwl

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Overview

collect HS metrics

Docker Requirement

broadinstitute/picard:2.23.6

Inputs

Name	Label	Description	Type	Secondary Files
bam			File	['^.bai']
reference			['string', 'File']	['.fai', '^.dict']
metric_accumulation_level			string
bait_intervals			File
target_intervals			File
per_target_coverage			boolean?
per_base_coverage			boolean?
output_prefix			string?
minimum_mapping_quality			int?
minimum_base_quality			int?

Outputs

Name	Label	Description	Type	Secondary Files
hs_metrics			File
per_target_coverage_metrics			File?
per_base_coverage_metrics			File?