tools_collect_alignment_summary_metrics.cwl - genome/analysis-workflows GitHub Wiki
Documentation for collect_alignment_summary_metrics.cwl
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Overview
collect alignment summary metrics
Docker Requirement
broadinstitute/picard:2.23.6
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bam | File | ['^.bai'] | ||
| reference | ['string', 'File'] | ['.fai', '^.dict'] | ||
| metric_accumulation_level | string |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| alignment_summary_metrics | File |