tools_cnvkit_vcf_export.cwl - genome/analysis-workflows GitHub Wiki
Documentation for cnvkit_vcf_export.cwl
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Overview
Convert default cnvkit .cns output to standard vcf format
Docker Requirement
etal/cnvkit:0.9.5
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| segment_filter | method for filtering/merging neighboring copy number segments | ['null', {'type': 'enum', 'symbols': ['ampdel', 'ci', 'cn', 'sem']}] | ||
| cns_file | File | |||
| male_reference | boolean? | |||
| cnr_file | File? | |||
| output_name | string |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| cnvkit_vcf | File |