Documentation for bqsr.cwl

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Overview

create BQSR table

Docker Requirement

broadinstitute/gatk:4.1.8.1

Inputs

Name	Label	Description	Type	Secondary Files
reference			['string', 'File']	['.fai', '^.dict']
bam			File	['.bai']
known_sites			{'type': 'array', 'items': 'File', 'inputBinding': {'prefix': '--known-sites', 'position': 4}}	['.tbi']
intervals			{'type': 'array', 'items': 'string', 'inputBinding': {'prefix': '-L'}}

Outputs

Name	Label	Description	Type	Secondary Files
bqsr_table			File