tools_bisulfite_vcf2bed.cwl - genome/analysis-workflows GitHub Wiki
Documentation for bisulfite_vcf2bed.cwl
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Overview
convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script
Docker Requirement
mgibio/biscuit:0.3.8
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| vcf | File | |||
| reference | string | |||
| assay_non_cpg_sites | {'type': 'enum', 'symbols': ['true', 'false']} |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| methylation_bed | File[] | |||
| methylation_bedgraph | File[] |