tools_bisulfite_qc_coverage_stats.cwl - genome/analysis-workflows GitHub Wiki
Documentation for bisulfite_qc_coverage_stats.cwl
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Overview
Biscuit QC: Bisulfite conversion rate.
Docker Requirement
mgibio/biscuit:0.3.8.2
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| vcf | File | |||
| bam | File | |||
| reference | string | |||
| QCannotation | File |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bga_bed | File | |||
| cov_dist | File | |||
| bga_bed_dup | File | |||
| dup_report | File | |||
| cpg_bed | File | |||
| cov_dist_cpg | File | |||
| cpg_dist | File |