tools_bisulfite_qc_conversion.cwl - genome/analysis-workflows GitHub Wiki
Documentation for bisulfite_qc_conversion.cwl
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Overview
Biscuit QC: Bisulfite conversion rate.
Docker Requirement
mgibio/biscuit:0.3.8.2
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| vcf | File | |||
| bam | File | |||
| reference | string | |||
| QCannotation | File |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| base_convertion | File | |||
| read_convertion | File | |||
| cph_retention | File | |||
| cpg_retention | File |