tools_apply_bqsr.cwl - genome/analysis-workflows GitHub Wiki
Documentation for apply_bqsr.cwl
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Overview
apply BQSR
Docker Requirement
broadinstitute/gatk:4.1.8.1
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| reference | ['string', 'File'] | ['.fai', '^.dict'] | ||
| bam | File | ['.bai'] | ||
| bqsr_table | File | |||
| output_name | string? |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bqsr_bam | File | ['^.bai'] |