subworkflows_vcf_readcount_annotator.cwl - genome/analysis-workflows GitHub Wiki
Documentation for vcf_readcount_annotator.cwl
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Overview
Add snv and indel bam-readcount files to a vcf
Inputs
| Name |
Label |
Description |
Type |
Secondary Files |
| vcf |
|
|
File |
['.tbi'] |
| snv_bam_readcount_tsv |
|
|
File |
|
| indel_bam_readcount_tsv |
|
|
File |
|
| data_type |
|
|
[{'type': 'enum', 'symbols': ['DNA', 'RNA']}] |
|
| sample_name |
|
|
string |
|
Outputs
| Name |
Label |
Description |
Type |
Secondary Files |
| annotated_bam_readcount_vcf |
|
|
File |
|
Steps