subworkflows_strelka_process_vcf.cwl - genome/analysis-workflows GitHub Wiki
Documentation for strelka_process_vcf.cwl
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Overview
process VCF workflow
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| vcf | File |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| processed_vcf | File | ['.tbi'] |
Steps
| Name | CWL Run |
|---|---|
| add_gt | tools/add_strelka_gt.cwl |
| bgzip | tools/bgzip.cwl |
| index | tools/index_vcf.cwl |