subworkflows_single_cell_rnaseq.cwl - genome/analysis-workflows GitHub Wiki
Documentation for single_cell_rnaseq.cwl
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Overview
Running cellranger count and lineage inference
Inputs
| Name |
Label |
Description |
Type |
Secondary Files |
| chemistry |
|
|
string? |
|
| reference |
|
|
Directory |
|
| sample_name |
|
|
string |
|
| fastq_directory |
|
|
Directory[] |
|
| lineage_min_cells |
|
|
int? |
|
| lineage_min_features |
|
|
int? |
|
| lineage_reference_data |
|
|
string |
|
Outputs
| Name |
Label |
Description |
Type |
Secondary Files |
| counts_out_dir |
|
|
Directory |
|
| lineage_cellmatch_lineage_out_dir |
|
|
Directory |
|
Steps