subworkflows_sequence_to_trimmed_fastq.cwl - genome/analysis-workflows GitHub Wiki
Documentation for sequence_to_trimmed_fastq.cwl
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Overview
sequence (bam or fastqs) to trimmed fastqs
Inputs
| Name |
Label |
Description |
Type |
Secondary Files |
| unaligned |
|
|
../types/sequence_data.yml#sequence_data |
|
| adapters |
|
|
File |
|
| adapter_trim_end |
|
|
string |
|
| adapter_min_overlap |
|
|
int |
|
| max_uncalled |
|
|
int |
|
| min_readlength |
|
|
int |
|
| unzip_fastqs |
|
|
boolean? |
|
Outputs
| Name |
Label |
Description |
Type |
Secondary Files |
| fastqs |
|
|
File[] |
|
| fastq1 |
|
|
File |
|
| fastq2 |
|
|
File |
|
Steps