subworkflows_pindel_region.cwl - genome/analysis-workflows GitHub Wiki
Documentation for pindel_region.cwl
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Overview
Run pindel on provided region
Inputs
| Name |
Label |
Description |
Type |
Secondary Files |
| reference |
|
|
string |
|
| tumor_bam |
|
|
File |
['^.bai'] |
| normal_bam |
|
|
File |
['^.bai'] |
| region_file |
|
|
File |
|
| insert_size |
|
|
int |
|
| ref_name |
|
|
string? |
|
| output_name |
|
|
string? |
|
| tumor_sample_name |
|
|
string |
|
| normal_sample_name |
|
|
string |
|
Outputs
| Name |
Label |
Description |
Type |
Secondary Files |
| pindel_region_vcf |
|
|
File |
['.tbi'] |
Steps