Documentation for pindel_cat.cwl

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Overview

Per-region pindel

Inputs

Name	Label	Description	Type	Secondary Files
reference			['string', 'File']	['.fai', '^.dict']
tumor_bam			File	['^.bai']
normal_bam			File	['^.bai']
region_file			File
insert_size			int
tumor_sample_name			string
normal_sample_name			string

Outputs

Name	Label	Description	Type	Secondary Files
per_region_pindel_out			File

Steps

Name	CWL Run
pindel	tools/pindel.cwl
cat	tools/cat_out.cwl