subworkflows_merge_svs.cwl - genome/analysis-workflows GitHub Wiki
Documentation for merge_svs.cwl
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Overview
Merge, annotate, and generate a TSV for SVs
Inputs
| Name |
Label |
Description |
Type |
Secondary Files |
| cohort_name |
|
|
string? |
|
| estimate_sv_distance |
|
|
boolean |
|
| genome_build |
|
|
string |
|
| max_distance_to_merge |
|
|
int |
|
| minimum_sv_calls |
|
|
int |
|
| minimum_sv_size |
|
|
int |
|
| same_strand |
|
|
boolean |
|
| same_type |
|
|
boolean |
|
| snps_vcf |
|
|
File? |
|
| sv_vcfs |
|
|
File[] |
|
| blocklist_bedpe |
|
|
File? |
|
Outputs
| Name |
Label |
Description |
Type |
Secondary Files |
| bcftools_merged_sv_vcf |
|
|
File |
|
| bcftools_merged_annotated_tsv |
|
|
File |
|
| bcftools_merged_filtered_annotated_tsv |
|
|
File |
|
| survivor_merged_sv_vcf |
|
|
File |
|
| survivor_merged_annotated_tsv |
|
|
File |
|
Steps