subworkflows_cram_to_bam_and_index.cwl - genome/analysis-workflows GitHub Wiki
Documentation for cram_to_bam_and_index.cwl
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Overview
cram_to_bam workflow
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| cram | File | ['^.crai'] | ||
| reference | ['string', 'File'] | ['.fai', '^.dict'] |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bam | File | ['.bai'] |
Steps
| Name | CWL Run |
|---|---|
| cram_to_bam | tools/cram_to_bam.cwl |
| index_bam | tools/index_bam.cwl |