Documentation for bisulfite_qc.cwl

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Overview

Bisulfite QC tools

Inputs

Name	Label	Description	Type	Secondary Files
vcf			File
bam			File
reference			string
QCannotation			File
output_dir			string

Outputs

Name	Label	Description	Type	Secondary Files
QC_directory			Directory

Steps

Name	CWL Run
bisulfite_conversion	tools/bisulfite_qc_conversion.cwl
mapping_summary	tools/bisulfite_qc_mapping_summary.cwl
cpg_retention_distribution	tools/bisulfite_qc_cpg_retention_distribution.cwl
coverage_stats	tools/bisulfite_qc_coverage_stats.cwl
gather_to_sub_directory	tools/gather_to_sub_directory.cwl