subworkflows_align.cwl - genome/analysis-workflows GitHub Wiki
Documentation for align.cwl
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Overview
Unaligned to aligned BAM
Inputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| bam | File | |||
| reference | ['string', 'File'] | ['.fai', '^.dict', '.amb', '.ann', '.bwt', '.pac', '.sa'] | ||
| readgroup | string |
Outputs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| tagged_bam | File |
Steps
| Name | CWL Run |
|---|---|
| align_and_tag | tools/align_and_tag.cwl |