Get started - gc5k/GEAR GitHub Wiki

Getting started

Just typing gear in this way below to feel how gear works. The command below will simulate a quantitative trait with for a population with 100 markers and 1000 individuals.

java -jar gear.jar simuqt --n 1000 --m 100 --make-bed --out simu 

java -jar gear.jar	Routine for java jar
simuqt	subcommand
--n 1000	option and its parameter
--m 100	option and its parameter
--make-bed	option
--out simu	option and its parameter

Or you can specify the RAM for gear by adding "-Xmx"

java -jar -Xmx10G gear.jar simuqt --n 1000 --m 100 --make-bed --out simu 

---